Hevea brasiliensis (rubber tree): 110655797
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Entry
110655797 CDS
T05150
Name
(RefSeq) uncharacterized protein LOC110655797 isoform X1
KO
K06100
symplekin
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110655797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbr03021
]
110655797
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110655797
Transcription machinery [BR:
hbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110655797
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110655797
U7-dependent histone pre-mRNA processing factors
110655797
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
110655797
NCBI-ProteinID:
XP_021667935
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MASRDQALSLLAAANTHSDLAVKLSSLKQAKDILLSVEPSLAAELFPYLAELQFSPENLV
RKMLVKIIEEIGLKAMEHCSVLIPVLLAFMKDTDPLVARQSIISCTHIFCAVLEEMALQF
RRRGKVEHGLEELWLWMIKFKDAVFAIAMEPGYVGTKLLSLKFLETYILLFTDDTNDSDK
LVAEGNRQLFNVSWLVGGHPVLDPVALMSDADRTLGILLDFLQSPSNLPGSLTIVVVNCL
AAIARKRPLHYGTVLSALLDFSPNFEAVKVCHTASIQYSLRTAFLGFLRCTHPVIFESRD
RLLRALRAMNAGDAADQVIRQVDKMIKNNERASRESRFSRDDQLSSQLPVSGDQLRKRSV
SLDTEELANGHEVSSKRICYGPNISSTVPIQINDSEEESVSVNGVSSNASLLDSDLTPVE
QMIAMIGALLAEGERGAESLEILISNIHPDLLADIVIANMKHLPKNPPPLSRSGNLPVSR
PIGPVSSPAQVVVTSAPTNSFSPVPTAHVPFSATNGLSLSDTSTANNSPADAKRDPRRDP
RRLDPRRAASSVGVPSIPITDDAGAMEPEFDGSISLSKPLSLPVVTSVESPALPMSNSET
DDKAMENPLVPESDQVSLKEKIFSKPEDAVPSSEVKTSSDHGLSPPHTVDEDSVASKLSD
VEVTFEAHTSAFMELDQHSPAVSNTSIPEETCQDLPQLPIYIELTEEQQRNVRKLAVERI
IESYKPLPGTDYSWTRMALLARLVAQIDADDDIVVMLQNHIVLDYQLQKGHELVLHILYH
LHSLVTLDSAGSSSYASALYEKFLLVVAKSLLDTFPASDKSFSRLLGEVPVLPESALTLL
DDLCYRDVLDSHGKEVRDGERVTQGLGAVWGLILGRPNNRQACLDIALKCAVHSQDDIRA
KAIRLVANKLYQLNYIADNIEQFATKMILSAVDQRTSDTELSQSGSTDQREGEVGSQETS
VSGSQLSDTGNCETNTARGAQGVVQSASTMSLSEAQRLVSLFFALCTQKPTLLQLVFDIY
GRAPKTVKQAVHRNIPILIRALGSSYSELLRIISDPPEGCENLLMLVLQKLTQETMPSAD
LIATVKHLYETKLKDATILIPILSSLSKNEVLPIFPRLVGLPIEKFQMALAHILQGSAHT
GPALTPAEVLVAIHDISPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPL
PLLFMRTVIQAVDAFPTLVDFVMELLSKLVSRQVWKMPKLWVGFLKCVSQTRPHSFRVLL
QLPPPLLESALNKHANLRGPLATYASQPSIKTSLPRSTLAVLGLLNDSQTQQHVTSLHPS
ETSSSVHGANLT
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgagggaccaagcgctttctcttctcgctgcagcgaacactcatagcgatttg
gcggtgaagctctcctccttgaagcaggccaaagacattctattgtcagtcgaaccgtct
ttagctgccgagcttttcccttacttggctgaacttcaattttcgcccgagaatctagtt
cgaaaaatgcttgtcaagataattgaagaaattggtttaaaagcaatggagcactgttct
gtacttatacctgtcttattggcttttatgaaagatactgatcctctcgttgcaaggcag
tctattattagttgcacacatatcttttgtgctgttctagaggaaatggcattgcagttt
cgccggcgtggtaaggtggagcatggtcttgaagaactatggctatggatgatcaagttc
aaggatgcagtgtttgcaattgcaatggagcctggttatgttgggacaaagttgctgtca
ttgaaatttttggaaacatacatattactttttacagatgacaccaatgattctgacaaa
cttgttgcagaaggaaatagacagttatttaatgtttcatggctagttggtggccatcct
gttttggatccagttgcactcatgtcagatgcagacaggactcttggcattctattggat
tttttgcaatcacccagcaatcttcctggttctttgacaattgttgtagtcaattgtctt
gcagctatagctaggaagaggccactccactatggaactgttctttctgcattgcttgat
tttagtccaaattttgaggcggtgaaagtatgtcatactgctagcatccagtactccttg
agaacagcctttttgggattcttgcggtgtacgcatccagtcatttttgagtcaagagat
agattgcttagggctttacgtgctatgaatgctggggatgcagctgatcaagttatccgt
caagttgacaaaatgattaaaaataatgagcgtgcttcacgtgaatccaggtttagcagg
gacgatcaactgtcaagccaacttccagtttcaggggatcagttgagaaaaagatctgtg
tctcttgatactgaagagctagcaaatggccacgaggtatcgtccaagcgaatttgttat
ggtcccaacatctcatcaaccgtgccaatccaaataaatgattctgaggaggaatctgta
tcagtcaatggagtatcctctaatgcttctttattagatagtgatttgactcctgtggaa
caaatgatagctatgattggtgcattgcttgctgaaggagagagaggtgctgaatcactt
gaaattctcatttcaaatattcatcctgatctgctagctgatattgtcatcgctaacatg
aagcatttgcctaagaatcccccacctttgtcaaggtctggaaatttgccagtatctcgt
ccaattggtcctgtaagcagtccagcacaagttgtggtcacttctgctccaacaaattct
ttttctccagttccaactgcacatgtgcctttttctgcaacaaatggtttatcattgtct
gatacgtctacagccaataattccccggctgatgctaaacgtgatccaagaagggatcct
cgtcgcctggatccacgacgtgcagcatcatctgttggagtaccatccatacctattaca
gatgatgctggtgccatggaacctgaatttgatggttctatttctttgagtaagcctctt
tcacttccggttgtgacatctgttgagagtcctgcacttccaatgtcaaacagtgaaact
gatgataaggctatggaaaatccactggtgcctgaaagtgatcaagtaagtttgaaagaa
aagattttcagtaaacctgaggatgctgttccctcttcagaagtcaagacttcatcagat
catggtctttctcctcctcacacagttgatgaggactctgttgcatcaaagttatcagat
gttgaagtgacatttgaagctcatacatcagcttttatggaacttgatcagcattctcca
gctgtttcaaacacatctatacctgaagaaacctgtcaggatttacctcagcttccaata
tatattgaattaactgaagaacaacaacgaaatgtgagaaaattggcagttgaacgaatt
attgaatcttacaagcctcttcctgggactgattatagttggacacgtatggcattgctt
gctcgattagttgctcagattgatgcagatgatgacattgttgtgatgctgcaaaaccat
attgttttggattaccagctgcaaaaggggcatgagcttgtgctgcatatcttgtaccat
ctacattctcttgtgactttagattcagctggaagttcctcatatgcttctgctctgtat
gagaaattcctcttggtagtggccaagtctctgctggatacttttccagcttcagacaag
tccttcagcaggcttcttggtgaagttccagttttgccagagtcagccttgacattgtta
gatgatctctgttatagagatgttttggattcccatggaaaagaggttcgagatggtgag
cgtgtcactcaaggccttggtgctgtgtggggtttgattttgggccgcccaaataatcgg
caagcgtgcttagatatagctttgaagtgtgctgttcattcacaagatgacattcgagcg
aaagctatccgtctggtggcaaataaactctatcaactaaactacatagcagataatatt
gagcaatttgcaacaaaaatgattttgtcagctgtggatcagcgtacttcagacacagag
ctttcacagtcagggtccactgaccaaagagaaggggaggttggaagccaggagacatca
gtcagtggctctcaactctcagatactggaaattgtgaaactaacactgcaaggggtgca
caaggggttgtccaaagtgcgtcaaccatgtcactgtctgaagctcaacgactagtttct
ttattttttgctttatgcacacagaaacctactcttcttcaacttgtatttgatatttat
gggcgagcaccaaaaactgtgaagcaggctgttcatcgcaatattcctatccttatcagg
gccctagggtcatcttattctgaactgctgcgtataatatctgatccaccagaaggatgt
gaaaatcttctgatgctggtgctacaaaaattgacccaagagacaatgccttctgccgat
ctgattgccactgtgaaacatttatatgaaactaagttgaaggatgctactatactaatt
ccaatattatcttcgctctccaagaatgaggttttaccgattttcccccggttagttggt
cttccaatagaaaagtttcagatggcactcgctcacattttacagggttcagctcatacg
ggtccagctttaacacctgcagaagtgttggttgccatccatgatatcagtcctgagaaa
gatggccttgcattaaaaaagataacagatgcatgctctgcttgttttgagcaacgcaca
gtattcacacaacaggttttggctaaggccctgaatcagatggttgatcaaaccccattg
cctctactcttcatgagaacagtaattcaggcagttgatgcatttcctaccctggttgat
tttgttatggagttgctgtccaaacttgtgagtagacaggtgtggaaaatgccaaaattg
tgggttgggtttctgaaatgtgtgtctcaaacaaggccacattctttccgtgtattatta
cagttaccacctccactacttgaaagtgctttgaacaagcatgctaatctcagaggcccc
ttggctacttatgcaagtcaaccaagtatcaaaacttcactacctagatcgacgctagca
gttcttggtcttctcaatgattcacaaacacagcaacatgtcacctctttacacccttca
gaaacgagttcctctgttcatggagcaaatcttacatga
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