Hevea brasiliensis (rubber tree): 110657875
Help
Entry
110657875 CDS
T05150
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03013
Nucleocytoplasmic transport
hbr03015
mRNA surveillance pathway
hbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110657875
09122 Translation
03013 Nucleocytoplasmic transport
110657875
03015 mRNA surveillance pathway
110657875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110657875
03041 Spliceosome [BR:
hbr03041
]
110657875
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110657875
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110657875
Spliceosome [BR:
hbr03041
]
Complex C
Other components
EJC/TREX
110657875
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110657875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
110657875
NCBI-ProteinID:
XP_021670984
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKVPDSVTKVNGESAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVHIKTHKDLLKNECPHVVVGTPGRILAL
ARDKELSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacaagggacaacgatgcttacgaggaggagcttctcgattacgaggaagaa
gaagagaaagtccctgactctgtcaccaaagtcaatggcgaatccgccaagaagggctat
gtaggaatacacagttccggattcagagactttcttctgaagccagagcttctacgtgcc
attgtggactcgggatttgagcatccttctgaagttcaacatgagtgtatccctcaagcc
atcttgggcatggatgttatctgccaagctaaatctgggatggggaagactgctgtattt
gttctgtctactctccagcaaattgagcctacatctggccaagttattgcccttgttttg
tgtcatactagggagttggcttaccagatatgtcatgagtttgagaggttcagtacgtac
ttgcctgatatcaaggttgctgtcttttatggtggtgtccatatcaaaactcacaaggat
ttattgaaaaatgaatgcccacatgttgtcgttgggacacctggaagaatactggcactg
gcgagagataaggaactttcattgaagaatgtgaggcattttattctcgatgaatgtgac
aagatgcttgaatcacttgacatgaggagggatgtgcaggagatcttcaagatgactcct
catgataagcaagttatgatgttttctgcaacactcagcaaagaaatccgcccagtttgc
aagaaatttatgcaagatcctatggaaatttacgtcgatgatgaagccaagttgaccctt
catggtcttgtacagcactacatcaaattgactgagctggagaaaaaccggaagctgaat
gatctccttgatgcactggacttcaatcaagttgttatttttgtcaaaagtgtgaacaga
gcagccgagcttaacaagttacttgtggagtgcaattttccctcaatttgcattcattct
ggcatgtcccaagaagaaaggttgacacgctacaagggattcaaggaggggcataaaagg
attctcgtggccacagatttggttggtcggggaattgatattgaacgtgtaaacattgtt
atcaactatgacatgccagactctgctgacacttatctacatagagttggtagagctggt
aggtttggcactaaagggctcgcaattacatttgtatcatctgcttcagactctgatgtt
ctcaatcaggttcaggagaggtttgaggtggacataaaggagcttcctgagcagattgat
acgtctacatacatgccttcttag
DBGET
integrated database retrieval system
