Hevea brasiliensis (rubber tree): 110658901
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Entry
110658901 CDS
T05150
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110658901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hbr03041
]
110658901
Spliceosome [BR:
hbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110658901
Complex C
U5 SnRNP specific factors
110658901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
110658901
NCBI-ProteinID:
XP_021672380
LinkDB
All DBs
Position
Unknown
AA seq
2358 aa
AA seq
DB search
MWNNNGEAHIAPPGTGGPSVPPPPVPAQPSYTVLAQQTPPTPAEVEAKLEEKARKWQQLN
TKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFIPHAVYK
LLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHF
KRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVCTWFYDHKPLVKTKLING
PSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPL
YRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLGVYHTPMVMFIKA
EDPDLPAFYYDPLIHPITSTNKERREKKACDDDDDDDDDFLLPEEVEPFLQDTQLYTDTT
AAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNE
LHHRPPKAQKKKHLFRSLAATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHL
DYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGL
QYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWL
FFLRGIVPLLERWLGNLLARQFEGRHSKGTAKTVTKQRVESHFDLELRAAVMHDVLDAMP
EGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNR
ERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLE
SRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEAL
SRIKRHLLTQRAFKEVGIEFMDLYSALIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPN
WIKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLR
LVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRA
SEIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHP
DPNNENMVGYQNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVY
SKDNPNLLFSMCGFEVRILPKLRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHM
KVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQT
RIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGM
SHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIP
RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQA
LGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLW
WSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVL
DQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKAS
NKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGN
WFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQII
WFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLA
KWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACL
KIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPD
KTIITEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEIT
PPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRA
ISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNP
QVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTTHA
RILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYE
KVQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGIKLGTPREYYHEDHRPTHYLEF
SNLEEGETAEGDREDTFT
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaataatggagaggcgcatatcgcgccgccggggacaggtggtccttcggtg
ccgccaccgcctgttccggcacagccttcctatactgtgcttgcacagcaaacacctcca
acgccggctgaggtggaggcaaagctggaagaaaaggcccgtaaatggcagcagcttaat
acgaagaggtacagtgataagagaaagtttgggttcgttgagacgcagaaagaagacatg
ccgcctgagcatgtcaggaaaattatcagagaccatggggacatgtcctccaagaaattt
cgtcatgataaacgtgtttatcttggagcccttaaattcattccacatgcagtttacaag
cttcttgagaatatgccgatgccttgggagcaggttcgtgatgtgaaggttctataccat
atcactggggcaatcacttttgtgaatgaaattccatgggttgttgaacctatttattta
gctcagtggggtacaatgtggatcatgatgcgaagagagaagagggatcggaggcatttt
aagagaatgaggtttccaccatttgatgacgaggaacctccattggactatgctgataat
ttgttagacgttgatcctctggagcctattcaattggagctggatgaagaagaagattct
gcagtatgcacttggttttatgaccataagccccttgttaaaacaaagcttatcaacggt
ccaagttacaggaaatggcatctctccctccccatcatggcaactctgcaccggctggca
ggacagcttctatcagacctaattgatcgcaattatttctacttgtttgacatggagtct
ttctttacagctaaagcgttaaacatgtgcatacctggtggtcctaaatttgaaccttta
tatcgtgacatggagaagggagatgaagattggaatgagttcaatgacattaacaaactc
attattcggtcacctctcaggacagagtacagaattgcattccctcatctttataacaat
aggcccaggaaagtaaagcttggtgtgtaccacactcccatggtcatgttcattaaagct
gaggatcctgatttacctgctttctattatgatccattgatacaccctataacctccact
aacaaggagcgccgagaaaagaaggcttgtgatgacgatgatgatgatgatgatgatttc
cttttgccggaagaagttgaacctttcctgcaagacactcagctttatacagacaccaca
gctgctggtatttccctgttatttgcaccacggccgtttaacatgagatccggccgtatg
cgacgagcagaagatataccccttgtgtctgagtggtataaggagcactgtcctccatcc
tatccggtgaaagttagggttagctatcagaaattgttgaaatgttttgttttgaatgag
ttgcatcatagaccacccaaagcgcagaagaagaagcacttgtttcggtctctagctgca
accaagttcttccaaacaacagaactcgattgggcagaagcgggcttacaagtttgtaag
caggggtataacatgctgaacctgttgatccacaggaaaaatttaaattacctccatctt
gattataattttaacttgaagcctgtgaaaacccttactacaaaggaacgtaagaaatcc
cggtttggtaatgcttttcatctctgccgtgagatcctgcgcttgacaaagcttgtggtt
gatgccaatatccagttccgactgggtaatgttgatgcattccagctagctgatggtctg
caatatacattttctcatgttggtcagttgactggcatgtatcgctacaagtacaggctg
atgagacagattagaatgtgcaaagacttgaagcacttgatatattaccgcttcaatacg
ggtccagtggggaaaggacctggctgtggattctgggcaccaatgtggagagtatggttg
tttttccttcgtggaattgtacctcttcttgaacggtggttagggaatctccttgcacga
cagtttgaaggccgccattcaaaaggaacggctaagactgttacaaagcaacgtgttgag
agtcactttgatttggagcttcgtgctgctgtcatgcatgatgttcttgatgccatgcca
gagggtattaagcaaaataaagctagaacaatattgcagcacctaagtgaggcctggcgt
tgttggaaagccaacattccctggaaggttcctggcttgccagtgcccattgaaaatatg
attcttcgttacgttaagtcaaaagcagactggtggacaaatgttgctcactataatcgt
gaacgtataagaagaggtgcaactgttgataagacagtttgccgaaaaaatcttggaagg
ttgactcgcctttggctaaaggcagaacaggaacggcaacacaattatttgaaagatggt
ccatatgtcacaccagaagaagcagttgccatttatacaacaaccgtgcattggctggag
tccagaaagttttctcccattccattccctccactgtcatacaagcatgacaccaagcta
cttattcttgctttggaaaggttgaaagagtcatatagtgtggctgtcagattaaaccaa
ctgcagagggaggaactgggtcttattgaacaggcttatgataatccacatgaggctttg
tcacggattaaacgtcacctgcttactcagcgtgccttcaaagaagttggcatagagttc
atggatttatatagtgctttgattccagtttatgaaattgaacctcttgaaaaaataaca
gatgcatatcttgaccaatatctgtggtatgaaggtgacaagcgccatctctttccaaac
tggattaagcctgcagattctgagccaccaccactgcttgtttataaatggtgtcagggt
ataaacaatttgcagggtatctgggacacaagtgacgggcagtgtgtagtgatgctacaa
acaaagtttgagaagttctttgaaaagattgacttgacaatgttaaataggcttcttcgt
ttggtgcttgatcacaacattgctgattacgttactgcaaagaacaatgttgtgttgtcc
tacaaagatatgagccacacaaattcttatggtttgatacgtgggttgcagtttgcttct
tttgttgtacaatattatggacttgtgctagatctgttacttcttggattgactcgtgcc
agtgagattgctggtccaccacaaatgccaaacgagttcatcacttattgggatacaaaa
gttgagacaaggcacccaattcggttatattctagatatatagacagggtgcatatattg
ttccgcttcactcatgaagaggctcgagatctcatccagcgatatcttactgagcatcct
gatcccaacaatgaaaacatggttgggtaccaaaacaagaaatgttggcccagagatgca
agaatgaggctcatgaaacatgatgttaatctcgggagaagcgtattttgggatatgaag
aaccgtctccctcgaagcatcacaactttggagtgggagaacagctttgtttctgtttac
agcaaggacaatccaaacttgcttttcagcatgtgtgggtttgaagttcgaatacttcct
aaactaaggatgactcaggaagcattcagcaataccagagatggtgtttggaatttgcaa
aatgagcagactaaagagcgaacagctgttgctttcctacgggttgatgatgagcacatg
aaggtgtttgagaatcgtgtgaggcagattcttatgtcttcagggtcaactactttcaca
aaaatcgtcaacaaatggaatacagctctgataggtttgatgacttatttccgtgaagca
actgtgcatactcaagaattgttagatttactggttaaatgtgaaaataaaatccaaact
cgtatcaagattggtttgaactcaaagatgccaagccgatttcctcctgtcatcttctat
acaccaaaagaaatcggaggacttggcatgctatcgatgggtcacatattgatcccacaa
agtgacctgcgatatagccagcagacagatgttggtgtaacccacttcaggagtggaatg
agtcatgaagaagaccagctgattccaaatctttatcgctacattcagccatgggagagc
gagttcatagattcacagcgtgtatgggcagagtatgcccttaagaggcaggaagcacaa
gcacaaaataggcgtttaaccctagaagatttggaagattcttgggacaggggaattcca
cgtattaatactttatttcagaaggaccgtcatactcttgcatatgacaaaggatggaga
gtgcgtacagatttcaagcaataccaagttctaaagcaaaatcctttctggtggactcac
cagaggcatgatgggaaactgtggaacttgaacaattaccgaactgatgttatccaagct
cttggtggtgttgagggaattcttgagcatactttgttcaaaggaacatatttcccaacg
tgggaaggtctcttttgggagaaggcatctggttttgaagaatcaatgaagtacaagaag
cttaccaatgctcaaagatctggtctaaatcaaattcccaatcgaagatttactctttgg
tggtcacccacaataaatagggccaatgtctatgtgggtttccaagtgcagctagatcta
actggcatcttcatgcatggaaagatcccaaccttgaagatttcattaattcagatattc
cgagctcatctgtggcaaaagattcatgagagtgttgtcatggatctctgccaagtctta
gatcaggaattggatgctctggaaattgaaactgtgcagaaggaaacaattcatccaagg
aagagttacaagatgaacagctcctgtgcagacattctcctctttgctgctcacaggtgg
cctatgtcaaagcctagtcttgtggctgagtcaaaagatgtatttgatcagaaagccagc
aataaatactggattgatgtacagcttagatggggtgattatgactctcatgatattgag
cgttatacccgggccaaatttatggattacacgacggataacatgtctatatatccatct
ccaactggggtgatgattggacttgatctggcatacaatttgcattctgcatttggtaac
tggtttcctggatcaaaaccattgctagctcaggccatgaataagataatgaagtcaaac
ccagctttatatgtcttgagggagcggataaggaagggtttgcagttgtattcttctgag
cctacagaaccgtatttgtcatcccaaaactacggtgagatcttcagcaatcagattata
tggtttgttgatgatacaaatgtgtatcgcgtcacaattcataagacatttgaggggaac
cttacaacaaaacccataaatggtgcaatattcatattcaatcccagaactggccagcta
tttctgaaggtcatccacactagcgtatgggcaggacaaaaacgtcttgggcaacttgct
aagtggaaaaccgctgaagaagttgcagctcttgtgcggtctctgcctgttgaagaacaa
ccaaaacaaattattgtgacccggaaagggatgcttgatccattggaggttcacttgctt
gatttcccaaatatagtaattaaaggaagtgagttgcagttgccattccaggcttgcttg
aagatagagaaatttggagatttgattttgaaagcaacagagccacaaatggttttattc
aatatttacgatgattggctgaagagcatctcatcatacactgcattttcccgactcatt
ttgattcttcgtgcacttcatgtgaataatgagaaggcaaagatgctactcaagcctgac
aaaaccatcattacggagccacaccacatatggccttctctcactgatgatcaatggatg
aaggttgaggttgctttaagagatctcatactttctgactatgccaagaaaaacaatgtg
aacacatcagcactgacacaatctgagatccgtgatattattcttggtgctgaaatcact
cctccttctcaacaaaggcaacagatagcagagattgagaaacaggccaaagaagcaagt
cagttaacagcagtcacaacaaggacaacaaatgtgcatggtgatgaactcattgtcacc
accactagtccctatgagcaggctgcatttggttccaaaacagattggcgtgtcagggca
atatcagctacaaatctctaccttcgggtcaatcacatatatgtgaattcagaagacatc
aaggagacaggatatacctacatcatgcccaagaacattctgaagaagttcatctgcata
gcagatttgcgtactcaaatttctgggtacctttatggtattagtcccccagataaccct
caggtcaaggagatccgctgtattgccatgccacctcagtgggggactcatcaacaagtt
catctcccatcagctcttcctgagcatgatttcctcaatgatctggagcctttgggatgg
atgcacacccagccaaatgagcttcctcagttatcaccacaggatcttacaactcatgct
cggattttagagaacaacaagcaatgggatggggagaagtgcatcatcttgacttgcagt
ttcactccaggatcatgctcattaactgcatataagcttaccccaagtgggtatgagtgg
ggacgtgtcaacaaggacactggaagcaaccctcatggttacttgccaactcattatgag
aaggtccagatgctattgagtgatcgtttccttggtttctatatgattcctgataatggc
ccatggaactacaacttcatgggagtgaaacacacagtgagcatgaaatacggaatcaag
ctggggacaccacgggagtattaccatgaggaccatagaccaacccactacctggagttc
agcaacctggaggagggtgagactgctgagggtgaccgagaggataccttcacttga
DBGET
integrated database retrieval system
