Hevea brasiliensis (rubber tree): 110659107
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Entry
110659107 CDS
T05150
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110659107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110659107
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110659107
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110659107
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
110659107
NCBI-ProteinID:
XP_021672649
LinkDB
All DBs
Position
Unknown
AA seq
899 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKHIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFESEIEGLSVKKGKTRPPRLTHLEASIVRHKA
HIMKLEYILRLLENDELSPEQVNDVKDFLDDYVERNQEDFEEFSDIEELYSSLPLDKVES
LEDLVTVGPPGLVKGAPVHSLKTSLAAPASQMPATTTSTHEQATSVQEQADDTASQDGNS
EIVARTPPAKSSMIGSSAASTPTMNHATPVSVCVPSHTLSSVSASSILPSSISIRGVLEN
AAAAIPSSPAILGNSVKEEEIAGIPGRRPSPALSDTGLGRGIGRGSLPSQPSSGIPLSSG
AVPSNGALGAVPSASDIAKRSILATDDRLGTSGMVQPLTSPLSNRMILPQTGKINDGSGM
VDSCNVGEAAAIGGRVFSPSLVPGMNWRPGSSFQNQNELGQFRARTEIAPDQREKFLQRL
QQVQQQGHSTLLGMPSLAGGNHKKFSAQQNPLLQQQFNSQSSSVSSQSSLGLGVQAPGHS
VVTSAALQQQNSIHQQSSQQVMISSSAKDADVGHLNAEEQQQPQNLLDDSIPESVATSGL
SKNLVNKDELKTPYAMDTPTGASASLAEPVQVPRDIDLSPGQPIQSGQPSTALGVIGRRS
VSDLGAIGDTISGSAVNSGALHDQLYNLQMLEAAYHKLPQPKDSERARSYTPRHPAATPP
SYPQVQAPIVNNPGFWERLTIDNYGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKY
NTWFQRHEEPKVATDEYELGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagccgcaagctgcaaggcgagattgatcgcgttctgaagaaggtacaagaa
ggtgtcgatgttttcgacagcatctggaacaaggtttatgatacagataatgcaaatcag
aaagagaaatttgaggcagatttgaagaaggagatcaaaaagctacagagatacagggat
cagataaaaacatggattcaatctagtgagatcaaggataagaaggttagtgcctcttat
gagcaggctttagtggatgctcgtaagcatattgagcgtgaaatggagagatttaagatc
tgtgagaaggaaacgaaaacaaaggcattttcaaaggaaggactaggccaacagccaaaa
actgatccaaaggagaaggcaaaatcagagacaagggattggttaaacaatgtggttgga
gagttggaatctcagattgatagctttgaatctgagatcgaagggctatctgtaaagaaa
ggaaagacgaggccgcctagactgacgcatttggaggcatctattgtgcggcacaaggct
catataatgaagttagaatatatcttgaggctactggaaaatgatgaattgagtcctgag
caggttaatgatgttaaagacttcttggatgactatgtggaacgtaatcaggaggatttt
gaggaatttagtgacatcgaagagctttatagctcattaccattagacaaggtggagtct
cttgaagatctggttacagtcggtcctcctggtcttgtcaagggtgcaccagttcacagc
ttgaagacttctttagcagcaccagcatctcaaatgcctgctactaccacttctactcat
gagcaggctacttctgttcaggagcaagctgatgatacagcctcacaggatggtaattct
gaaattgttgctagaactccacctgccaaaagtagtatgattggttcttctgctgcatca
acaccaaccatgaatcatgcaactcccgtttctgtctgtgttccatctcatacattgtct
agtgtttcagcctcttcaattcttccaagttcgatttccattagaggtgtgctggaaaat
gcagctgctgccattccttcatctcctgcaattctgggaaattctgtaaaggaggaagaa
attgcaggcatccctggccgtagaccttcaccagctttgtctgatactggactaggaagg
ggcattggtagaggtagcctccctagtcagccttcatctggtatccctcttagttctggt
gcagttcctagcaatggagcacttggtgcagtaccgtcagcatctgacattgcaaaaaga
agtattttagcaacagatgatagacttgggactagtggaatggtccaacccttgacttcc
ccattaagtaatcgaatgatcttgcctcagactggcaagattaatgatggatctggtatg
gttgattcttgtaatgttggtgaagctgctgcaataggtggaagagttttttctccttct
ttggtccctggcatgaactggagacctggaagttcctttcaaaatcagaatgaactggga
caatttcgtgcaagaactgaaatagcacctgatcagagggagaaatttttgcaacgcctt
caacaagtccagcaacaaggtcacagcacccttcttggcatgccatctcttgctggtgga
aatcataaaaagttttctgcccaacaaaaccccttgttgcagcagcagttcaattctcaa
agttcatctgtctcttctcaatctagtctgggacttggagttcaggcaccaggtcacagt
gttgttacatctgctgccttacagcagcaaaactccatccatcaacagtctagtcaacaa
gttatgatatcaagtagtgcaaaagatgcagatgttgggcatttgaacgccgaggagcag
cagcaacctcagaatttacttgatgattcaattcctgaatctgttgctacatctgggctg
agcaaaaatcttgtgaacaaggatgaattgaaaactccatacgcaatggatactcctaca
ggagcatctgcttctttggcagagcctgtccaagtgccaagagatattgatctctcgcct
gggcaacccatacaatccggtcaaccttctactgcccttggtgttattggtcggagaagt
gtctctgaccttggtgccattggtgatactatcagtggatctgctgtgaattctggggct
ctgcatgatcagttatacaatttgcagatgcttgaggctgcatatcacaaacttcctcaa
cctaaagactcggaacgtgctaggagctatactccaaggcaccctgcagccacacctcct
agctatcctcaagttcaggcacctattgtaaataatcctggattctgggaacgactaacc
attgataattatggcactgatactttgttctttgcgttctactaccaacagaatacctat
cagcaatatttggctgcaagagagctaaagaagcaatcctggagataccacagaaaatac
aacacctggtttcaacggcatgaggaacccaaagttgcaactgatgaatatgaactgggc
acttatgtttactttgatttccatattgccaatgatgacctccaacatggatggtgtcaa
agaatcaagaccgagttcacttttgagtataactatcttgaagatgaacttattgtttag
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