Hevea brasiliensis (rubber tree): 110665043
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Entry
110665043 CDS
T05150
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110665043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110665043
03012 Translation factors [BR:
hbr03012
]
110665043
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110665043
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110665043
Translation factors [BR:
hbr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110665043
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
AAA_16
ATPase
T2SSE
AAA_30
PhoH
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
110665043
NCBI-ProteinID:
XP_021680698
LinkDB
All DBs
Position
Unknown
AA seq
1205 aa
AA seq
DB search
MSCYSTIFQFSIRTSTAMALRTTTSSFHFHFHRTPNISPRHPILFPLASFVYLSNPQILD
SKHVSYVPLDFKHRGTVRCTGAVCFLEWRTVASPFSCLQNSNYGRFAYHEVSSDDSDREF
GSSSSQSVSGSTLDNIDDWRWKLTMLLRNKDEQEVVSREKKDRRDFEHLSALANRMGLHS
HQYSRVVVFSKVPLPNYRPDLDDKRPQREVILPFGLQREVDAHLNAYLSKKSMKRGNFSA
NSLSRSSGGSMATTEGLYEQPDPLIQNNVVMEKIIQRKSLKLQNKQQEWQESPEGQKMTE
FRRSLPAYKERDALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAACGATCSIICT
QPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGILLRRLLVDRNL
NGVTHVVVDEIHERGMNEDFLLIILRDLLPRRPELRLILMSATLNAELFSSYFGGAPMLH
IPGFTYPVRAHFLEDILEITGYRLTPYNQIDDYGQDKVWKMQKQTQAFRKRKSQIASAVE
DALEAANFKGYRLRTQESLSCWNPDSIGFNLIEHVLSHIVKKERPGAVLVFMTGWDDINS
LKDQLATHPILGDCSKVLLLACHGSMASSEQRLIFDKPEDGVRKIVLATNMAETSITIND
VVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDA
FADYQLPELLRTPLQSLCLQIKSLQLGGISEFLSRALQPPEPLSVQNAVEYLKVIGALDE
NENLTVLGRHLSVLPVEPKLGKMLILGAIFNCLDPVMTIVAGLSVRDPFLMPFDKKDLAE
SAKAQFSARDYSDHLALVRAYDGWRDAERQQSGYEYCWRNFLSAQTMRAIDSLRKQFFFL
LKDTGLIDQKKEECSMWSHDEHLIRAVICAGLFPGICSVVNKDKSIALKTMEDGQVLLYS
NSVNAGVHKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLFGGDLSRGGLDGHLKMLGG
YLEFFMVPALGNTYLSLKRELEELIRKKLQDPNLDIQSDNELLMAIRLLVSQDQCEGKFV
FGRQLPAPSQKAMKDAMTGKQPYDNSKNELQTLLVRAGHGAPSYKTKQLKNNQFRSTVIF
NGLDFVGQPCSSKKLAEKDAAAEALLWLKGEVHSSSRDINHVSMLLKKGKRKSQNKTPVH
GGKWS
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgctactcaactattttccagttctctattagaacatccacagctatggctttg
agaacaaccacatcgtcttttcattttcatttccatagaactccaaacataagtcctagg
cacccaattctatttccattggcatcttttgtttacctcagtaatccccaaatccttgat
tctaagcatgtctcgtatgtgcccctggattttaagcatcgggggacagttaggtgtact
ggtgctgtttgttttttagagtggaggaccgttgcatcgccattctcctgcctgcaaaac
tcgaattatggacggtttgcatatcatgaggtttctagtgatgattcggaccgtgaattt
gggtcgtcttcctcgcagtcagtgagtggttccacacttgataacatcgatgattggaga
tggaagttaacgatgctacttcgcaacaaagatgagcaagaagtcgtttcgagggagaaa
aaggacaggcgtgattttgagcatctgtcagcattggcaaatcgaatgggtttgcatagc
catcagtattcaagagttgttgtcttcagtaaagtacctctgccaaattacagacctgat
ttggatgacaagcgaccccagagagaggtgatattgccttttggactgcaaagagaagta
gatgcccatcttaatgcttacctttccaaaaagtccatgaaaaggggaaacttttctgct
aattcattgtcaaggtcaagtggtggaagtatggccaccactgaaggactctatgaacag
ccagatccattgatacagaacaatgttgtcatggagaaaattatccagcggaaaagtttg
aaactgcaaaataagcaacaagaatggcaggaatctcctgagggccaaaagatgactgaa
tttcgccgaagtcttcctgcatataaagaaagagatgcactactaaaagccatttctgaa
aatcaggtggtggttgtctcaggtgaaactggttgtggtaaaactacacaactccctcaa
tacatactagaatctgagattgaagctgcttgtggagctacttgcagtatcatatgtact
cagcccagaagaatatctgctatggctgtgtctgaaagagttgcggcagagcgaggagaa
aaactgggagaatcagttggttacaaagttcggcttgagggaataaaagggagggacacg
cgccttctgttttgcactactggcatattattgaggagattacttgttgacagaaatttg
aatggtgtaacccatgttgttgttgatgagattcatgaacgtggaatgaatgaagatttc
cttcttatcatcctgagagatctccttcctcgtcggccagagttgaggttgattctgatg
agtgcaaccttgaatgctgagcttttctcttcctactttggtggtgctccaatgctccat
attccaggttttacgtatccagttcgagcacattttcttgaggatattctagaaatcact
ggataccggttgactccatataaccaaattgatgattatggtcaagataaggtttggaaa
atgcaaaaacaaactcaagctttcagaaagaggaagagccagattgcctctgctgttgag
gatgcacttgaagctgccaactttaaaggctacagattacgtacccaagagtctttgtcc
tgttggaatccagactcgattggttttaatctcattgagcatgtgctttctcacatagtc
aagaaagagaggcctggtgctgtgttggtttttatgactggttgggatgacataaattct
ttgaaggatcagctagcgactcatcctatcttgggtgattgtagcaaagtattgctactt
gcttgtcatggttctatggccagctctgagcagaggttaatatttgataagcctgaagat
ggagtgcggaaaattgtccttgctactaacatggctgagactagtattacaatcaatgac
gtggtctttgtggttgactgtgggaaggcaaaggagacatcatatgatgcactaaacaat
actccttgtttgcttccatcatggatctcaaaggctgcagcgcgacaaagaagaggaaga
gctggtcgtgttcaacctggcgagtgttatcatctctatcccagatgtgtatatgatgct
tttgctgattatcaactaccagaacttttaaggacaccattgcagtctttgtgcctgcaa
atcaaaagtctccaacttggtggtatttcagagttcctttctagggcattgcaaccaccg
gaacctctatcggttcaaaatgctgttgaatatttgaaagtgataggagctttggacgag
aatgaaaatctaacagtgctaggacgccacttgtcggtacttccagttgagcctaagctt
gggaaaatgctcatattaggggccattttcaactgtctagatccagtaatgaccattgtt
gctggtcttagtgtcagagatccattcttgatgccatttgacaagaaggatcttgcggag
tctgccaaagcacagttctctgctcgtgattacagtgaccatcttgcccttgtccgagca
tatgatggttggagagatgctgaaagacaacaatctggttatgagtactgttggagaaat
tttctatctgcgcaaactatgagagccattgattctcttcggaagcaattctttttcttg
ctcaaggatactggtctcattgatcagaaaaaagaggagtgcagcatgtggagccatgat
gagcatcttatccgagcagtcatctgtgctggcttgttccctgggatatgttctgttgtg
aacaaggataagtctatagcattgaaaacaatggaggatggtcaagtacttctgtattcg
aattctgtgaatgctggggtacacaaaattccatacccgtggttagtttttaatgaaaaa
gtgaaagtgaattctgtgtttctccgggattctactggtgtatctgattctgtgttgctt
ttattcggaggagacctttcaagaggtggactggatggacacctaaaaatgttgggagga
tacttggaattttttatggtacctgccttgggaaatacatatctaagcttgaagagagag
cttgaggaactaattcggaagaaacttcaagaccccaacttggatatacaatctgacaat
gagctcttgatggcaataagattactggtttcacaggatcaatgtgagggtaaatttgta
tttggtcgccagctgccagcaccttcacagaaggcaatgaaagatgcaatgactggcaaa
cagccatatgataattctaaaaatgagctacaaactttgcttgtcagggctggacatgga
gcaccctcctataagacaaaacaactgaaaaacaaccagtttcgctccactgtgatcttt
aatgggttggactttgtggggcagccttgcagtagtaaaaaacttgcagaaaaggatgct
gccgctgaggctctgctgtggttgaagggtgaggtccattcatcctcaagagatattaac
catgtgtctatgcttttaaagaagggtaaaagaaaaagccaaaacaagactccagttcat
ggtggtaaatggagttaa
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integrated database retrieval system
