Hevea brasiliensis (rubber tree): 110665048
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Entry
110665048 CDS
T05150
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110665048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110665048
03012 Translation factors [BR:
hbr03012
]
110665048
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110665048
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110665048
Translation factors [BR:
hbr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110665048
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
Ank_2
AAA_22
Ank_5
ATPase
nSTAND3
Ank
ResIII
AAA_19
Rad17
AAA_7
AAA_16
NACHT
ABC_tran
Motif
Other DBs
NCBI-GeneID:
110665048
NCBI-ProteinID:
XP_021680706
LinkDB
All DBs
Position
Unknown
AA seq
1238 aa
AA seq
DB search
MGKKRQKKTEQQENPNVAEAARIRISQILEQFRAAKDQVYTFEANLSNRERAVVHEVCKK
MGMKSKSSGRGNQRRVSVYKNTKNADTAKAKDNITCLNFSEESKLVLQELFANYPPEDGE
FGAKIVGIRKGKNSKIRGMKDDIFSMPSMTKADIKKRVESLNSRIEKAANLRQIVEERSR
LPIASFRDVITSSVDSHQVVLISGETGCGKTTQVPQFLLDHKWGKGEACKIVCTQPRRIS
ATSVAERISYERGENIGDDIGYKIRLESKGGRNSSIVFCTNGVLLRVLVSRGTSRLKREA
SNKSGKDDVSNITHIIVDEIHERDRYSDFILAIIRDILPSYPHLRLIMMSATLDAERFSQ
YFGGCPIICVPGFTYPVKSFYLEDVLSILKSPDNNHIDSAMPSAPQKSHELTEEDKAALD
EAINLAWTNDEFDTLLDLIYSEGTPKVYNHHDSLTGLTPLMVFAGKGRVGDVCMLLSVGA
DCHSQDKNGLTALDWAKRENQQETAEVIKGHVESALTDTLEQKQLVDKYLATINPELIDF
VLIEQLLRKICIDSKDGAVLVFLPGWDDINKTRERLFANPFFKDSSKFMMISLHSMVPSM
EQRKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWV
SKASSRQREGRAGRCQPGICYHLFSKLRAASLPDFQVPEIRRMPIEDLCLQVKLIDPNCK
IEDFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAI
LMNCLDPALTLACASDYRDPFTLPVLPNEKKRATAAKFDFASLYGGHSDQLAVIAAFECW
KNAKGRGQEAWFCSQYFISSSTMNMLHGMRKQLESELIRNGFIQEDVSCCNLNAHDPGII
RAVLVAGMYPMVGRFLPPRNGKRFHVETATGAKVRLHPHSLIFKLSFKKTDDCPLIVYDE
ITRGNGGMHIRNCTVVGPLPLLLLATEIVVAPPKDDNEEDDEGDDDDNNGSDDAGEDESD
EDEMETDGKLGGNNYEKIMSSPDNSVTAVVDRWLYFGSTALDVAQIYCLRERLSAAVLFK
VKHPREVLPPALEASMHAAACVLSYDGLSGISLPLESVDSLTSMIRATGINNSAPGRRMG
PGQNSNDFLKSLISPNIQHTGPSHYHKARFTGFQRKSNGNELSSQDFIPPGKIPYQRPPM
QGPNSVGYDSGTHESSNPRGDSSKRQRGNASKKQWFNF
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagagacaaaagaaaacagagcaacaagaaaaccctaatgttgctgaagct
gctcggattcgaatttcccaaatactagagcagttccgtgctgctaaggatcaagtgtac
acatttgaagctaatttatcaaaccgtgaacgtgctgtggtgcatgaagtatgcaagaaa
atgggtatgaaatccaagagttctggacgtgggaatcagcgacgagtctctgtttacaag
aatacaaagaatgcagacactgcaaaggcaaaggacaatatcacatgtttgaatttttca
gaagaatcaaaactcgtgttgcaagaattatttgcaaactacccacctgaggatggagag
tttggtgcaaaaatagttggaattcggaaaggaaagaatagtaaaattcgaggaatgaaa
gatgatatcttcagtatgccttcaatgaccaaagcagatatcaaaaagagagtggaatcg
ctgaattctagaatagaaaaggctgcaaacttaagacagatcgttgaagagagatctagg
cttccaattgcatcctttagggatgtcattacatcctctgtagattctcaccaggttgtt
cttatttctggtgagactgggtgtggaaagactacacaggtcccacaatttttattggac
cataagtggggaaaaggcgaggcctgtaaaatagtctgcacacaacctcgtcgtatctca
gcaacatcagttgctgaaagaatatcttatgaaagaggagaaaatattggagatgatatt
gggtacaagattcggttggaaagtaaaggtggaagaaactcatcaattgtgttctgcaca
aatggggttctactgagggtgctggtttccaggggcactagtcggttgaagagggaagct
tctaataaatcgggcaaggatgatgtttctaacataactcacattattgtggatgaaatt
catgaaagggatcgctactcggatttcattttggcaattatcagagacatacttccttcg
tatcctcatcttcggctgataatgatgagtgctacccttgatgctgaacgtttttcacaa
tattttggtggctgcccaattatctgtgttcctgggttcacgtatcctgttaaaagtttc
tacttggaggatgtactttctattctaaaatctccagataataatcatattgattctgcc
atgccaagtgccccccaaaaaagccacgagcttacagaagaagacaaagctgctttagat
gaagctatcaatttggcttggacaaatgatgaattcgataccctcctggatttgatttat
tctgaaggaaccccaaaggtttataatcaccatgattctttgactggactaacgccacta
atggtctttgctggaaagggcagagtgggtgatgtttgcatgcttctctctgttggcgcg
gattgtcattcacaggacaagaatggactaacagcattggattgggccaagcgagaaaac
cagcaagaaactgctgaagtaataaaaggacatgttgaaagtgccttgactgacaccctg
gaacaaaaacaattagttgacaaatacctagctacaattaaccctgaacttattgatttt
gttcttatagagcagttactgaggaagatatgtattgattcaaaagatggtgcagtcctt
gttttccttcctgggtgggatgatataaataagactagggagaggttatttgcaaaccca
ttttttaaagattcttccaagtttatgatgatctctctccattcaatggttccatctatg
gagcaaaggaaagttttcaaacggccacctcagggttgccgcaaaatcattctttccact
aatattgcagaaagtgccattacaattgatgatgttgtctatgtcatagatagtggtcga
atgaaagaaaaaagttatgatccttataacaatgtatcaacccttcagtcttcttgggta
tccaaagcaagttcaaggcagcgtgagggacgtgcaggccgctgtcagcctgggatatgc
tatcatctcttttcgaagcttcgggcagcttctttgccggattttcaagttcctgaaatt
aggcgaatgccaattgaagatctctgtttgcaagtgaagttgatcgatcccaattgcaag
atagaagatttcctgcggaagacactggatcctccagttcctgaaaccatacataacgca
atcactgttctccaggatattggggctttatcactagatgaacaattgacagaactagga
gagaagctaggctgcctacctgttcatccattgacaagcaagatgcttttctttgcaata
ttgatgaattgcctcgacccagctttgacattggcttgtgcctccgactatagagatcca
tttacccttcctgtgttgcctaatgaaaagaagagagctactgctgctaaatttgatttt
gcttcactgtatggtgggcacagtgatcagctagcagttatagcagcctttgagtgctgg
aaaaatgctaaaggaaggggccaagaagcatggttttgttctcagtactttatctcttcg
agcaccatgaatatgctgcatggtatgcgtaagcagcttgagtcggaactaattcgtaat
gggttcattcaggaagatgtctcatgctgtaatctgaatgcacatgaccctggaataatc
cgtgctgtgcttgttgctggtatgtatcctatggtggggagattccttccacctagaaat
gggaagcgttttcatgtagaaaccgcaactggtgctaaagttcggttgcaccctcattcc
cttatttttaaattatcatttaaaaaaactgatgactgccctttgattgtatatgacgag
ataacccgtgggaatgggggtatgcatataaggaactgtactgttgttgggccactccca
ttgttattacttgcaacagagatcgtagttgctcctccgaaggatgacaatgaggaagat
gatgagggtgatgatgatgacaataatggaagtgacgatgcaggtgaagatgaaagtgat
gaggatgagatggaaacagatggcaaattgggtggaaacaattatgagaaaatcatgtca
tctcctgataattcagttacagcagttgtggaccgctggctttattttgggtcaacagcc
cttgatgttgctcagatttactgcttgcgagagcgattatcagcagcagtcttattcaaa
gtaaaacatcctcgggaagtacttcctcctgcccttgaggcctcaatgcatgcagctgct
tgtgttctctcttatgatgggctatccgggatatcattacctttagagtctgtagactcg
ctgacatcaatgatccgtgcgactgggattaacaactctgctccagggaggaggatgggg
ccaggccagaattcaaatgacttccttaaatcactgattagccctaacattcagcatact
ggtccttcgcattatcacaaagctagatttacaggattccagaggaaatcaaacggaaat
gaactgtcaagccaagattttataccacctggtaagatcccttatcaaaggcctccaatg
cagggtcccaattcagttggttacgattcaggtactcatgaatcttcgaatcctaggggt
gattcatctaagcggcagcgtggaaatgcatccaagaagcagtggtttaacttttag
DBGET
integrated database retrieval system
