Hevea brasiliensis (rubber tree): 110667557
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Entry
110667557 CDS
T05150
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110667557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110667557
03041 Spliceosome [BR:
hbr03041
]
110667557
03009 Ribosome biogenesis [BR:
hbr03009
]
110667557
03016 Transfer RNA biogenesis [BR:
hbr03016
]
110667557
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110667557
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110667557
Spliceosome [BR:
hbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110667557
Complex C
U4/U6.U5 tri-SnRNP related factors
110667557
Ribosome biogenesis [BR:
hbr03009
]
Eukaryotic type
Pre-60S particles
Helicases
110667557
Transfer RNA biogenesis [BR:
hbr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110667557
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
110667557
NCBI-ProteinID:
XP_021684136
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MASVKRKSVEDPSGEPLPMQKQRRENGSVTANESVACVHDVSYPEGYIPPPRPGFSVHKD
SKPVKEFPFTLDPFQSEAIKCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNQQRVIYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIEPNSSCLVMTTEIWRSMQYKGSEITREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPAGANGLYLVVDEKGKFREDSFQKALNALVPKSEGEKKRENGKWQKGL
VVGKIGEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNEDDEKVNIETI
FWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDEKL
EPPTAKMMLKGSADSLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQADRAIPDLEK
QVKVLEEERDSMIIEEEDNLKNYYDLIQQYKSLKKDVCDIVFSPKYCLPFLQAGRIVCLQ
CTGIDESSPSFSIEDKVTWGVIINFDRVKNFSEVHEPDDASRKPEDSNYTVDVLTRCVVS
RDGIAKKNIKIVPLKESGEPLVVSVSISEITSLSSARLYLSKDLLPLEVRENTLKKVLEI
LSRNPTGLPLDPEGDMKIQSNSYKKAVRRIEALEHLFEKHEIAKSPLIEQKLKVLHKKQE
LTAKIKSIKKTMRSSTSLAFKDELKARKRVLRRLGYVTSDDVVELKGKVACEISSADELT
LTELMFNGVLKDIKVEEMISLLSCFVWQEKLQDAAKPREELDLLFSQLQDTARRVAKLQL
ECKVQIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQL
IQAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtgaagagaaagtcggttgaagacccatctggggagcctctccctatgcag
aaacagcggagagagaatggttcagtgactgccaatgaatcggtggcctgtgttcatgat
gtctcatatccagagggttatattccacctcctcgcccaggcttttcagttcataaggac
tcgaagcctgtaaaagaattcccattcactctggacccttttcagtctgaagctattaag
tgccttgataatggcgagtctgttatggtttcagcacatacatcagctggaaaaactgta
gtggcattatatgctattgctatgtctctgagaaatcagcaacgtgtcatatacacttca
cccattaaggcactcagcaatcaaaaatacagagagttcaaagaagaattctctgatgta
ggtttgatgactggagatgtcacaattgagcctaattcttcttgcttggtgatgaccaca
gaaatatggcgcagtatgcagtataaaggatctgaaattactcgtgaggtggcttgggtc
atttttgatgaagtacattatatgcgtgatcgtgaaagaggcgtggtatgggaagaaagc
attgttatggccccaaagaattctagatttgtgttcctctctgcaactgtgcctaatgca
aaagaatttgctgattgggtagcaaaggttcaccaacaaccatgtcacatcgtttatact
gactatcgaccaactcctcttcagcattatatttttcctgccggagctaatggtttatac
ttagtggtggatgaaaaggggaagtttcgagaggacagctttcagaaagcattgaatgca
cttgttcctaagagtgaaggtgagaagaaaagggaaaatgggaagtggcaaaagggttta
gtggtgggtaaaattggcgaagaaagtgacatctttaagatggtaaaaatgatcattcag
cgccagtatgacccagtcattcttttcagctttagcaaacgagaatgtgaatttcttgcc
atgcagatggcaaaaatggatctaaatgaggatgatgagaaagtgaacatagaaaccatt
ttttggagtgccatggacatgctttctgatgatgacaagaaactacctcaggtttcaaat
atgttacccctcttaaagcgggggataggtgtgcatcattctggcttgcttcccattttg
aaagaagtgatcgagattttatttcaagaagggttgatcaagtgtctgtttgctacagag
acctttagcataggtttgaacatgcctgcaaaaactgtggtattcaccaatgtccgtaaa
tttgatggagacaagttcagatggatatctagtggagagtacatccaaatgagtggccga
gctggtcgtcgaggaattgatgatcgtgggatatgcatccttatggtggacgagaaactt
gagcctcctactgctaaaatgatgctcaaaggaagtgctgacagtttgaacagtgccttc
catttaagctacaacatgcttttaaatcaaatgcgctgtgaagatggggatcctgaaaat
ttgctgcgaaattcattctatcaattccaagctgatcgtgctattcctgatcttgagaaa
caagtgaaagtccttgaagaagagagggactcgatgataattgaagaagaagataatcta
aagaattattatgatctgattcaacaatacaaaagtttgaagaaggatgtttgtgatatt
gtgttttctccaaagtactgcctaccctttctgcaggccggtagaattgtatgcctccaa
tgcactgggattgatgaaagctctccatctttctccattgaagacaaagttacatggggt
gtgataatcaattttgacagagtcaaaaacttttctgaagtgcatgaaccagatgatgca
agtagaaagcctgaagattcaaactacacagtggatgttcttacaagatgtgtcgtgagc
agagatggaattgcgaaaaagaatatcaagattgtcccattgaaagagtctggagagcct
cttgttgtttctgtttctatctctgagattactagtcttagtagtgctcgcttgtacctg
tcgaaggaccttttgcctttggaagttcgagagaacaccttaaagaaggttttagaaatt
ctatctagaaatcctactggactgccactagatcctgaaggagatatgaagatccaaagt
aactcatacaaaaaggcagtccgacggatagaggctttagagcacctctttgagaagcat
gaaattgcaaaatctccccttatcgagcaaaaactcaaagttttacacaagaagcaagaa
ttaacagccaagattaagtcaatcaagaaaacaatgcgttcttccacatctttggctttc
aaagatgaacttaaagccagaaaaagagttcttcggaggctaggatatgttacaagtgac
gatgtagtggagttgaaaggaaaagtagcttgtgaaattagtagtgcagatgagttgacc
ttgacagagctcatgttcaatggtgttttaaaggacataaaggtggaggagatgatatct
cttctttcatgttttgtgtggcaagaaaagctccaggatgctgcaaaacctagggaagaa
cttgacttgctcttttcacaattacaagatacagctcgaagagttgccaaacttcagctt
gaatgcaaggtccaaattgatgtggagaattttgtgagttcatttcggcctgatattatg
gaggctgtatatgcttgggcaaaaggatccaaattctatgaaatcatggaaattacacag
gtttttgaggggagtttgatcagggcaattaggagattggaggaagttcttcagcagctt
atacaagcagcaaaatccattggcgaaacagagctggaggcaaaatttgaagaggctgtt
tcaaaaatcaagagagacatagtgtttgcagcatctttatacttatag
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integrated database retrieval system
