Hevea brasiliensis (rubber tree): 110669288
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Entry
110669288 CDS
T05150
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110669288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hbr03041
]
110669288
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110669288
Spliceosome [BR:
hbr03041
]
Complex C
Other components
Step II factors
110669288
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
AAA_16
TsaE
ABC_tran
Cas3-like_C_2
Sigma54_activ_2
PhoH
Flavi_DEAD
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
110669288
NCBI-ProteinID:
XP_021686563
LinkDB
All DBs
Position
Unknown
AA seq
1189 aa
AA seq
DB search
MATTTQTRDNDGLKKLEYLSLVSKVCTELETHLGFGDKVLAEFITELGRNCETVDEFDSK
LKENGAEMPDYFVRTLLTIIHAILPPKPKSGKESKNKDPTSLSDAKNSKFRALAIADSKE
RAKNLERELEMEARERRKEEEKEEDDRNRDRDRRGKDRDRHRDRSDRDERRRDRDYDVGH
DSRDGDYRSRGKQRGRHDRHRRNGSEENDYHDRDGGESERDRRNGPNSSSEPELYKVYKG
RVSRVMDSGCFVQLNDFRSKEGLVHVSQIANRRVGNAKDVVKRDLEVYVKVISISGQKLS
LSMRDVDQNTGKDLLRLKRSSDDDDGTFRTNPSASKEGPVTRTGLSGIRIMEEDDAVPSR
RPLKRMSSPERWEAKQLIASGVLSVKEYPMYDEERDGMLYQEEGAEEDLEIELNEDEPAF
LQGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRP
WEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIYK
LKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKR
VAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVVMLDEAHE
RTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYT
KQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELII
LPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQ
GLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGFTT
LTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPL
SKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVY
EAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITA
GFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVID
PKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacaacacaaacacgagacaacgatggccttaagaaactggaatacttatca
ctcgtatctaaggtttgcacggagctcgaaactcacttagggtttggggacaaagtattg
gcggagttcatcaccgaattaggccgaaattgtgagacagtagatgaatttgattccaag
ttgaaggaaaacggtgccgagatgcccgattactttgtccgcacattactaactatcatt
catgccatccttccgcccaagcccaagtctggtaaggaatccaagaataaagaccccact
tctctctctgacgctaaaaattccaaattcagagctctggctattgcagacagtaaggag
agagccaagaaccttgaacgcgaactcgaaatggaggctagggagagaaggaaagaagag
gaaaaggaagaggacgataggaacagagacagagaccggaggggtaaggatagagacagg
catagggatagatctgatagagatgagaggcgtagagatagagattatgatgttggtcat
gacagtagagatggtgattataggagtagaggaaagcagaggggtaggcatgacaggcat
aggagaaatgggagtgaagaaaatgattatcatgacagggacggtggtgaaagcgaaagg
gatcggaggaacggacccaatagttccagtgagcctgaattgtacaaggtttataagggc
agggtgtcgagagtgatggactcaggttgttttgtgcaattgaatgactttaggagcaag
gagggtttggttcatgtttcacagattgcaaataggagggttggtaatgccaaggatgtt
gtgaagcgggacctggaggtttatgttaaggtgatttcaatttccggacagaagttgagt
ctttccatgagggatgttgatcagaatacaggtaaggatctacttcgtttgaagaggagc
tcagatgatgatgatggtacttttaggactaatccttcggcatctaaggaggggccagtg
accaggacagggctttctgggattaggatcatggaggaggatgatgcggttccatcgcgt
cggccattgaagagaatgagctcaccggagagatgggaggcaaaacagttgattgcttct
ggagttttaagtgtcaaagagtatcccatgtatgatgaagagcgagatgggatgctttat
caagaagagggcgctgaggaggatcttgaaattgagttgaatgaagatgagcctgcattt
ttgcaaggccagactaggtactctgttgatatgtctcccgtgaagatttttaagaatcca
gaaggatcattgagtcgtgcagctgcgcttcagtctgcacttataaaggagaggagggaa
gtaagggaacaacagcagaggacgatgcttgattcaataccgaaggatcttaatcgtcct
tgggaagacccaatgcctgagactggtgagaggcatctcgctcaggagcttagaggagtt
ggtttatcggcttatgacatgcctgagtggaagaaggatgcatttggaaaagctttaaca
tttggccaaagatcaaagttatccattcaggagcagaggcagagcttgccaatctataaa
ttgaaaaaagagctaattcaagctgtccatgataatcaggttctggtagttattggtgag
acaggctcaggtaagactacccaggtgacacagtatcttgccgaggcaggttataccacg
aagggtaagattggatgtactcagcctcgtcgggtggctgcaatgtctgtggccaagagg
gtggctgaagagtttgggtgtcgtttaggggaggaggttggttatgccattcgttttgag
gattgtactggaccagatacagtgatcaagtacatgacagatggcatgctacttagggag
attctgattgatgataatctttctcaatattcagtggtaatgcttgatgaagctcatgag
aggacaatccacactgatgtcctttttgggttacttaaacagcttgtaaagaggagacct
gatcttcgcttgattgtcacatctgccacactagatgctgagaaattttcaggatatttc
ttcaactgtaacatattcacaattcctgggagaacttttcctgtggagatattgtacacc
aaacagccagaaagtgactatttagatgcagctttgatcactgtgctacaaatccacttg
acagaacctgaaggtgacatacttcttttcttgactggtcaggaggagattgattttgca
tgccaatctctctatgagaggatgaaaggtttgggaaaaaatgttccggagttgattata
ttacctgtttatagtgcccttcccagtgaaatgcagtccaggatttttgaacctgcccca
ccagggaagaggaaggttgttgtggcaaccaatattgctgaggcttcactgacaattgat
gggattttttatgttattgatcctgggtttgcaaagcagaatgtatataatccaaagcag
gggcttgattctctggttataacgccaatttcacaagcatctgccaagcagcgggctgga
agagctgggcgtactgggcctggaaagtgttatcgtctgtacactgaaagtgcataccgt
aatgagatgtccccaaccacaattccagaaattcaaagaataaatcttggatttactaca
ctcacaatgaaggcaatgggaattaatgatctcttgtcttttgattttatggatccacct
tcaccacaggccctcatatctgccatggaacagttatacagtctaggagctctggatgaa
gagggccttctgaccaaattgggaaggaaaatggctgaatttcctctggatccaccattg
tccaagatgttgttggcaagtgtagatcttgggtgcagtgatgagattttgactattatt
gccatgatccaaactggtaacatattctacaggcctagggaaaaacaagctcaagcagat
cagaagagggccaagtttttccagcctgagggagaccatttgaccttactcgctgtatat
gaggcttggaaagctaagaacttttcagggccttggtgttttgagaattttgttcagtcc
agatccttgaggagggcacaggatgttaggaaacagcttctctcaatcatggataaatac
aaattggatgttgtgagtgctggaaagaatttcacgaagataagaaaagcaatcacagct
ggattcttctttcatgctgctagaaaggatccacaggagggttatcggaccctagttgag
aaccaacctgtttatatacacccgagcagtgctctttttcagagacaaccagactgggtc
atctaccatgaactggtaatgactacaaaggagtacatgcgcgaggtgactgttatagat
cccaaatggcttgtggaactggcaccgaggttctttaaggtggcagatcctacaaaaatg
agcaagaggaaacgtcaagaacggatcgagccactatatgacagataccatgaacctaat
tcatggcgattgagtaaacggcgagcgtga
DBGET
integrated database retrieval system
