Hevea brasiliensis (rubber tree): 110670824
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Entry
110670824 CDS
T05150
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110670824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110670824
03041 Spliceosome [BR:
hbr03041
]
110670824
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110670824
Spliceosome [BR:
hbr03041
]
Complex B
Other components
Prp19-related factors
110670824
Complex C
110670824
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
ARM_TT21
PPR
Motif
Other DBs
NCBI-GeneID:
110670824
NCBI-ProteinID:
XP_021688790
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MSISRELYPSQDDLLYEEELLRNPFSLKLWWRYLIARREAPFKKRFIIYERALRALPGSY
KLWHAYLTERLDIVRNLPITHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTNQKLITR
TRRTFDRALCALPVTQHDRVWELYLRFVSQEGMPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSRLWQEAAERLASVLNDDQFYSIKGKPKHTLWVELCDLLTRHAKEVSGLNVDAIIRGG
IRKYTDEVGRLWTSLADYYIRRGLFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
AHKMENLDLSDEEEDVLEENGASQDDDVRLEVNSKFEKKILSGFWLHDDNNVDLMLAQLE
YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKALGKPH
TLWVAFAKLYENHNDLVNARVIFDKAVQVNYRSVDNLASIWCEWAEMEIRHKNFKGALEL
LRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEEGLGTLESTRAVYERILD
LRIATPQIIINYALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK
LERARELFEHAIEMAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKLEMY
KIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARGIYVFA
SQFADPRSDADFWNEWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQR
LNIDEAKDKLKQAGVPEDEMVALERQLAPVANNTTAKDSGRTVGFVSAGVESRPDAVKVN
ANQEDIELPEESDSEDDEKVEITQKDVPTAVFGGLARKREETEKAEGGDDAATAKDGAGH
LGALERIKRLKRA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatttctagagagctttacccttcccaagatgatctattatacgaagaggagctg
ttgcgcaacccattcagcctcaagctctggtggcgctacctaatagcccgccgtgaagca
cctttcaaaaagcggttcatcatctatgagagagccctcagagctttaccagggagctac
aagctttggcatgcatatcttactgagcgtctcgatattgttagaaacctacccatcact
cactcccaatatgaaaccctgaacaatacatttgaaagggcattggttaccatgcataaa
atgcccagaatttggatcatgtacttgcaaaccctaactaaccaaaaattgatcacccgc
acccgtagaacttttgatagagcactatgtgctttgcctgtaactcagcatgatagggtt
tgggagctatatttaaggtttgtgagccaagaaggcatgccaattgagacttcacttcgg
gtttataggaggtacttgaagtatgaccctagtcatattgaggattttattgagtttttg
gtgaattctcgtctttggcaagaagcagctgagagactagcttcagtgttgaatgatgat
caattttattcaataaaggggaaaccaaagcatacattgtgggtagaattgtgtgatttg
cttactagacatgcaaaggaagtgtctgggttgaatgtggatgccattattagaggtggg
attaggaagtatacagatgaggttggcagattgtggacgtcacttgctgattattatatc
aggaggggtttgtttgagaaggcgagggatatttttgaggagggtatgactacagtggta
acagtgagagattttagtgttatatttgatgcatattcacagttcgaagaaagtatggtt
gctcataagatggagaatttggatttgagtgatgaggaagaggatgtgttggaggagaat
ggtgcctcgcaggatgatgatgttcgattggaagtgaattctaagtttgagaagaagata
cttagtgggttttggttacatgatgataataatgtggatttgatgctggcccagttggaa
tatcttatggatagaaggccagaattggccaatagtgtacttctgcgacaaaatccgcat
aatgtggaacaatggcacaggagggttaagctttttgagggtaatccaactaaacagata
ctaacttacactgaggcagtaagaacagttgatccaatgaaagcattaggaaagccccac
actttgtgggttgcttttgctaagttgtatgagaatcacaatgatcttgtcaatgctaga
gtaatttttgacaaggcagtgcaagtgaactataggagtgtggataatctagctagcatt
tggtgtgagtgggctgaaatggaaattagacacaaaaatttcaaaggtgcactggagctg
ttgaggcgggccacagcagaaccatcggttgaggtcaaacgaagagtggctgctgatggc
aatgaacctgtccagatgaagttgcataagtccttgagactctggaccttttatgttgat
ttggaagagggtcttgggaccttggagtccactcgagctgtttatgagcggatattggac
ctgagaatagccacaccacaaatcattatcaattatgcattacttctagaagaacataag
tactttgaagatgcattcaaggtatatgaaaggggtgtgaaaatattcaagtaccctcac
gtgaaagacatatgggtcacatatctttcaaagtttgtaaagagatatgggaagacaaaa
ctggaacgagcaagagagttgtttgaacatgctattgaaatggctcctgctgatgctgta
aaacccttgtatcttcagtatgcaaagctggaagaggattatggtttggcaaagcgagct
atgaaagtttatgatcaagcaactaaggctgtcccaaataatgaaaaactggagatgtat
aaaatttatattgctcgtgctgctgagatatttggtgtccccaaaacaagagaaatatat
gaacaagcaatagagtctggtcttccagacaaagatgtaaagacaatgtgcttgaagtat
gctgaattggagaagagcctgggagaaattgatcgagctcgtggaatatatgtatttgca
tctcagtttgctgatccaagatctgatgcagatttttggaatgaatggcatgaatttgag
gtgcaacatggaaatgaagatactttccgagaaatgctgcgtattaaacgaagtgtttct
gcaagctatagccagacgcatttcattctgccggagtatttaatgcagaaggatcaaagg
ttaaatattgacgaggcaaaagacaaattgaaacaggctggggtccctgaagatgaaatg
gttgctctagagaggcaattagccccagtggccaataatactacagctaaagatagtggc
agaacggtgggctttgtgagtgctggggtggaatcacggcctgatgcggtgaaggttaat
gcaaaccaagaagacattgaactgccagaagaaagcgactctgaagatgatgaaaaagtg
gaaattacacaaaaagatgttccaactgctgtctttggaggattggctaggaagagggaa
gagaccgaaaaagctgagggtggagatgatgccgcaactgctaaggatggtgcaggccat
cttggtgcccttgagagaataaagaggctaaaacgtgcatga
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