Hevea brasiliensis (rubber tree): 110671173
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Entry
110671173 CDS
T05150
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110671173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110671173
Enzymes [BR:
hbr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110671173
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110671173
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110671173
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
110671173
NCBI-ProteinID:
XP_021689252
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MLSVVRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPESAPLDGHFLRYKWYRIQSDR
KVAVCSVHPSEQATLQCLGCVKSKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAINENG
NEEEELFGRFNSSGSGVINTSLSGPASSASLTNGSAPLYPAAVTQRSGGETWFEVGHSKT
YTPSADDIGHVLKFECVVVDAETKLPVGHVNTILTSRVIPAPSPTPRRLIPVSGVDVIRH
LDSDGRISSSGTFTVLSYNILSDVYATSETYSYCPSWALSWPYRRQNLLREIVGYRADIV
CLQEVQSDHYEEFFAPELDKHGYQALYKRKTNEVYGGNTHTIDGCATFFRRDRFSHVKKY
EVEFNKAAQSLTEAVVPSAQRKTALNRLVKDNVALIVVLEAKFSNQGADNVGKRQLLCVA
NTHVNVHHDLKDVKLWQVLTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVD
PLHPDLVVDPLGILRPHSKLTHQLPLVSAYSSFVRLGVGLGLEQQRRRMDPATNEPLFTN
CTRDFIGTLDYVFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKSR
PRR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtggtacgtgtgcacctcccctcggatatccccatagtaggctgtgagtta
acgccgtacgtcctcctacggagacctgacaagaccgtcacaaccgacgatgtccctgag
tctgcccctctcgacggtcatttcttgagatacaagtggtatcggatacaaagtgataga
aaagttgctgtatgtagtgtgcatccatctgagcaagccacattgcagtgcctaggttgt
gttaagtccaaaatacctgttgccaaaagttaccattgctctcccaagtgcttctctgat
gcatggcagcatcaccgtgttttacatgaccgtgctgcgagtgctataaatgaaaacgga
aatgaggaggaagagttatttgggcgtttcaatagctctggatctggagttattaatact
agcttgtctggtcctgcatcaagtgctagcttgacgaatggttctgcacctctatatcct
gcagcagttacacaaaggagtggtggtgaaacttggtttgaagttgggcattctaaaaca
tatactccatcagctgatgatattggccatgttctaaagtttgaatgcgttgtagtagat
gctgaaactaaattacctgtaggacatgtcaacaccattctaacctcccgtgtgattcct
gctccttcacctactccacgtcgcttgatcccagtcagcggagttgatgtgatcaggcat
ttagattcagatggccgtatttcatcctcaggaacttttactgtgctttcatacaacatt
ttgtctgatgtttatgcaacaagtgagacgtacagctattgtccttcttgggctctatct
tggccatatcgccggcagaatttgcttcgggaaattgttggatatcgtgcggacattgtt
tgtcttcaggaggtgcagagcgatcattatgaggagttttttgcccctgagttggacaaa
catggttatcaagctctttataagagaaaaacaaacgaggtttacggtggaaatacccat
actattgatggttgtgcaacattttttcgcagagataggttttcacatgtcaaaaaatat
gaggttgagtttaataaagctgctcagtccttgactgaagctgttgttccaagtgctcag
aggaaaactgctttaaatcgtttggtcaaggataatgttgcattaattgtggttttggaa
gcaaaattcagtaatcaaggagctgataatgttggaaaacggcagcttctttgtgttgca
aacacacacgtgaacgtgcatcatgatttaaaggatgtcaagctttggcaggttctcacc
cttttgaaaggattggagaaaatagctgccagtgcagacattccaatgttagtgtgtgga
gatttcaattccgtccctggaagtgctcctcatgctcttcttgctatgggaaaggtagat
ccattgcatccagatttagtggtagatcctcttggaatcttacgtcctcacagcaagctt
acacatcaactacctctggtcagtgcttattcatcttttgtaagactgggcgttggtctt
ggtttggaacagcaacggaggagaatggaccctgcaacaaatgaaccattgtttacaaac
tgcactagagattttattggcaccctagattacgtattttacacagcggacactttgaca
gtggagtccttgttggaactcttggatgaggaaagcttaaggaaagacacagccctacct
tctccagagtggtcctctgatcatatagcacttttagctgaatttcgttgcaagtctaga
ccgagacgttga
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