Hevea brasiliensis (rubber tree): 110671827
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Entry
110671827 CDS
T05150
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110671827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbr03021
]
110671827
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110671827
Transcription machinery [BR:
hbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110671827
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110671827
U7-dependent histone pre-mRNA processing factors
110671827
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
110671827
NCBI-ProteinID:
XP_021690112
LinkDB
All DBs
Position
Unknown
AA seq
694 aa
AA seq
DB search
MSSTGQSQSLKRRDAPVTREGDQLTLTPLGAGNEVGRSCVYMSYKGKTVLFDCGIQPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT
DYVKVSKVSVEDILFGEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICVIESTYGVQLHQPRHIREKRFTDVIHS
TISQGGRVLIPAYALGRAQELLLILDEYWANHSELHNIPIYYASPLAKKCMTVYQTYILS
MNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPGGLQSGLSRQLFDMWCSDK
KNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE
LMPPNIILVHGEGNEMGRLKHKLITEFADGNTKIITPKNCQSVEMYFNSEKMAKTIGKLA
ENTPDVGETVSGILVKKGFTYQIMAPEDLHVFSQLSTTNISQRITIPFSGAFGVIKHRLE
QIYEIVESGTDEESGVPTLQVHERVTVKHESDRHISLHWNADPISDMVSDSVLALVLNIS
REVPKVVVESEAVKSEEENGKKAEKVIYALLVSFFGDVKLGENGKLVITVDGNVAQLDKQ
SGDVESENEGLKERVMTVFRRIQSAVRPIPFSAS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaacagggcaatcccaatctctgaaaagacgagatgcaccagtaacaagagaa
ggggatcaactaactttaactcctcttggggctggcaatgaagtgggtcgatcctgtgtg
tacatgtcctataaagggaagacagtgttgtttgattgtggaattcaaccggcttactca
ggcatggctgccttgccatactttgatgagattgatccttcaactattgatgtacttctc
atcacccactttcacttggatcatgctgcatctctgccttatttcttggagaagaccaca
tttaagggtcgtgttttcatgactcatgcaacaaaggctatctacaagttgcttttaaca
gattatgtaaaagtcagcaaggtttcagttgaagacattttgtttggtgaacaagacata
aaccgctccatggataaaattgaggttattgacttccatcaaacagtggaggtgaatggc
attaaattttggtgctatactgctggccatgtcctcggtgctgccatgttcatggttgac
attgctggtgttcgagtcctctatactggagactattcacgtgaagaagatcggcatctt
cgtgctgctgagatgccacaattctcccctgacatatgtgtaattgaatccacttatggg
gtccagctccatcaacctcggcacattcgggagaagcggttcactgatgttatccactca
actatttctcaagggggtcgtgttctaatcccagcatatgcccttggtcgtgcccaagaa
cttctcttgatccttgatgagtactgggcaaaccattctgagctccataacattcccata
tattatgcttctcctcttgcgaagaagtgtatgactgtctaccagacatatatcctttca
atgaatgagaggatccgcaaccaatttgcgaactcaaatcccttcaaattcaagcacata
tcaccactaaatagcattgaggattttactgatgtgggtccatcagtggtcatggctagc
cctggtggactgcaaagcgggttgtcaaggcagttatttgatatgtggtgctctgataag
aaaaatgcttgtgttatacctggatatgttgttgaaggaacgctagctaagaccatcatt
aatgaaccaaaggaggtcactctaatgaatggattaactgctcctctgaacatgcaagtc
cattatatttcattctctgcccatgcggattatgctcagacaagcacattcttgaaagag
ctgatgcctcctaacataattcttgttcacggagaaggtaatgaaatggggaggctcaaa
cataagcttatcacagagtttgcggatggcaacaccaaaatcattactcctaagaattgt
cagtctgttgagatgtatttcaactctgagaaaatggcaaaaacaatagggaaactagct
gagaataccccagatgttggtgaaactgtcagcggcatactagtaaagaagggcttcact
taccaaattatggcacctgaagatctccatgtattctcccagctatctacaacaaatatt
tctcagagaatcaccattccattctctggtgcctttggtgtgataaagcaccggcttgaa
cagatatatgagattgtggaatccggcacagatgaggagtctggggttccgacattgcaa
gtgcatgagcgagtgactgtgaagcatgagtctgatagacatatttcacttcattggaat
gcagatcctataagtgatatggtgtctgactcggttctagctctagttttgaacatcagt
cgggaggttcccaaggtggtagttgagtcagaggctgtgaaatcagaggaagaaaatggg
aaaaaagcagagaaggtgatttatgcactccttgtttcatttttcggagatgtgaagctt
ggagagaatgggaagctggtcataactgttgatgggaatgtggcacagctcgacaaacag
agcggggatgttgagagcgaaaatgaaggtctcaaggaaagggtcatgactgtgtttagg
cgaatccaaagtgcagtgaggccaattccattctctgcatcataa
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