Hevea brasiliensis (rubber tree): 110673844
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Entry
110673844 CDS
T05150
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110673844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110673844
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110673844
U7-dependent histone pre-mRNA processing factors
110673844
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
110673844
NCBI-ProteinID:
XP_021692756
LinkDB
All DBs
Position
Unknown
AA seq
741 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSRVASTIDAVLL
SHSDTLHLGALPYAMKQLGLLAPVYSTEPVYRLGLLTMYDHYLSRKAVSEFDLFTLDDID
SAFQNVTRLTYFQNHHLSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVVYAVDFNHRKE
RHLNGTVLESFVRPAVLITDAYNALSNQPPRQQRDKEFLEKTILKTLEAGGNVLLPVDSA
GRVLELILIMEQFWAQRLLNYPIFFLTYVASSTIDYVKSFLEWMSDSIAKSFETSRDNAF
LLKHVTLLVNKSELDNAPNGPKVVLASMASLEAGFSHDIFVEWAADAKSQVLFTERGQFG
TLARMLQADPPPKAVKVTMSRRVPLVGDELIAYEEEQKQLKREEELKASMIKEEELKASH
GPDSNTGDPMVTDASNTLASVEVAGSHGTGYRDILIDGFVPPPTSVAPMFPFYENTTEWD
DFGEVINPDDYVIKDDDMDQAAMHVGGDIDGKLDEGCASLILDTKPSKVVSNELTVQVKC
SLIYMDYEGRSDGRSIKSILAHVAPLKLVLVHGSAESTEHLKQHCLKHVCPQVYAPQIEE
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGRTESGMLSLLPITTSAPPH
KSVLVGDLRMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNVSQKGGGSGTQQIVIE
GPLCEDYYKIREYLYSQFYLL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgggaacatcggtgcaggtaacgcctctatgcggagtatacaacgagaatccattatcc
tacttggtctccattgatggctttaatttcctaatcgattgcggctggaacgaccacttc
gacccctctcttcttcaacctctctccagggtagcttcgacgatagatgcagtattattg
tcgcattccgatacgcttcatctaggcgcattgccctatgccatgaaacagcttggcctc
ttggctccggtttattctactgaaccagtctaccgattaggtctcctaaccatgtatgat
cactacctctctcgaaaggctgtttcggaatttgatttgtttactctggatgatattgat
tctgcttttcagaatgttaccaggctaacttactttcagaatcatcatctttctggaaaa
ggagaggggattgtgattgctcctcatgtggctgggcatctcttaggaggtactatttgg
aagataaccaaggatggtgaggatgttgtatatgctgttgacttcaatcaccgtaaagaa
aggcatttgaatggtactgttctggaatcatttgtccgacctgctgttctcataactgat
gcctataatgctttgagtaatcagcctcctagacagcaaagagacaaagaatttctagag
aagactattttaaagactctagaagcgggtggaaatgtattacttcctgttgatagtgct
gggcgagtgctggagcttatcttaataatggaacagttctgggcacaacgtctcttgaac
tatccaatattctttctgacatatgttgcatcaagtaccattgactatgtcaagagtttc
ttagagtggatgagtgattcaattgcaaagtcttttgaaacttctcgtgacaatgctttt
cttctgaagcatgtgacacttctagtcaacaagagtgaactagacaatgctccaaatggt
ccaaaggttgttctagcatccatggccagtttggaagcaggtttttcgcatgacatattt
gttgaatgggcagcagatgctaaaagccaagtgcttttcacggaaagaggccaatttggc
accttagctcgcatgcttcaggctgatccacctccaaaggcagttaaagttactatgtcg
aggagggttcctttagtcggggatgagctaattgcttatgaagaagagcaaaagcaattg
aaaagggaggaggaactgaaagctagtatgatcaaagaggaagaattaaaagcatctcat
gggcctgatagcaatacaggtgatccaatggtcactgatgctagcaatactcttgcttca
gtagaagtagctggttcacatgggactggataccgggacatattaattgatggatttgtt
cctccacccactagtgttgcaccaatgtttccgttctatgaaaatactactgagtgggac
gattttggtgaagtcataaatcctgatgactacgtaattaaggatgatgacatggaccag
gcagctatgcatgttggaggagatattgatggaaaacttgatgaaggatgtgctagtttg
atacttgatacaaagccttcaaaagttgtgtccaatgaattgactgttcaagtgaagtgt
tcgctgatttacatggattatgagggtcgttctgatggacggtcgattaaatcaattctt
gcccatgtggctcctctgaagcttgttttggtgcatggatcagctgagtccacagaacat
ctaaagcagcattgcttaaaacatgtctgtcctcaagtttatgcccctcaaattgaagag
accattgatgttacgtctgatttgtgtgcttacaaggtgcaattgtccgagaagctgatg
agtaatgtgctctttaaaaagttgggagattatgaaatagcttgggtggatgctgaggta
gggagaacagagagtggcatgttatcattattacccatcactacttcagcccccccacat
aaatccgttcttgttggtgatttgagaatggcggatttcaaacagttccttgctagcaag
ggtgtccaggttgaatttgctggtggagcattgcgatgtggagagtatgttactcttcgc
aaagttgggaatgtaagccagaagggcggtggttctggcactcagcaaattgttatcgaa
ggacccttgtgcgaagactactacaagattcgggagtatctctattcacaattttatttg
ctttaa
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