Humisphaera borealis: IPV69_04780
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Entry
IPV69_04780 CDS
T07075
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hbs
Humisphaera borealis
Pathway
hbs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hbs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IPV69_04780 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbs03021
]
IPV69_04780 (rpoD)
Transcription machinery [BR:
hbs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IPV69_04780 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
SidF
DUF7032
DUF641
Motif
Other DBs
NCBI-ProteinID:
QOV90677
UniProt:
A0A7M2WYS5
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All DBs
Position
1292145..1294067
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AA seq
640 aa
AA seq
DB search
MNYRAIIPPPPRPTPASTPAGKASSSVKEAAAAAAILESPLIGSGSLEEADRRVQVLLDM
GVSRGYLTYEELNEKLPDEVVSPDKLDSLLMRIDEMGIKLIDEFDIADHQKGGKKKGAAV
VELPPTPALPVVPVVTKKGSSVKPILPMKGADDDKAIDTDDDGEEIDLSLEEELAEASTK
RIDDPVRMYLTQMGEIPLLTREQEIGLAKKIEITRKIFRSKVLESDYCLQSAVEILQQVE
EGDLPFDRTMKISTDEGMADKGTISQRIPTNLSSVRIMLQRNRDEWEKLKDCKNKKEADE
LRMAVRRRRRRATKLLEELALRTSKVTPLMKKLNSISTKMVELEQRIAELQKVKNPGEDL
EVCQEELAGLQDLVLEDAQDLHRRVTAIRKIFFKYEDAKRKLSGGNLRLVVSIAKKYRNR
GLSFLDIIQEGNTGLMRAVDKYEYRRGFKFSTYATWWIRQAITRAIADHARTIRIPVHMI
ETMSKLRNISKGLMQELGREPTIEEIAKKAKMAVSETRRVLKISRHPISLDRPVGESEDS
YFGDFIEDEKAENPVESATQEMLKDKIEQVLKTLTYREREIIKLRYGIGDGYTYTLEEVG
RIFKVTRERVRQVEAKAIRKLQHPVRARKLEGFLPGGVTQ
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgaactaccgtgcgattattcctcctcctccgcgaccgacccccgccagcacgccggcg
ggaaaggccagcagttccgtgaaggaagcagcagctgcagccgcgatcctggaaagcccc
ctcatcggttccggttcactcgaggaagctgaccggcgcgtgcaagtactgcttgatatg
ggcgtctcccgggggtacctcacctacgaagagctgaacgaaaagctccccgacgaagtc
gtctcccccgataagctcgattcgctcctgatgcgcatcgacgagatgggcatcaagctc
atcgacgagttcgatatcgccgaccaccagaagggtggcaagaagaagggcgctgccgtc
gtcgagctgccccccacgccggcgctgccggtcgtgcccgtcgtcaccaagaagggttcg
agcgtcaagccgatccttcccatgaagggtgccgacgacgacaaggcgatcgataccgac
gacgacggcgaagagattgacctgtcgctcgaagaggaactcgctgaagcgtcgaccaag
cggatcgacgaccccgttcgcatgtatctcacccagatgggcgagatccccctgctcacc
cgcgagcaggaaatcgggttggccaagaaaatcgaaatcacccgcaagatcttccgctcg
aaggtgctcgaatccgactactgcctgcagtcggccgtcgagatccttcagcaggtcgag
gaaggcgatcttcccttcgaccggacgatgaagatcagcaccgacgaagggatggctgac
aagggcaccatctcgcagcgcatccccacgaatttgagcagcgtgcgcatcatgctgcag
cgcaaccgcgacgagtgggagaagctcaaagactgcaagaacaaaaaggaagccgacgaa
ctccgcatggcggtccgccgccgtcgccgtcgcgccaccaagctgctcgaagaactcgcg
ctgcgcaccagcaaggtgacgccgctgatgaagaagctcaactccatctccaccaagatg
gtcgagctggaacagcgcatcgccgagcttcagaaggtgaagaatcccggcgaagacttg
gaagtctgccaggaagagctggccggccttcaggacctggtgctggaagacgcacaggat
ctgcaccgccgggtgacggcgattcgcaagatcttcttcaagtacgaagacgccaagcgg
aagctgtcgggcggtaacctccgcctggtggtgtcgatcgccaagaagtaccgcaaccgt
ggcctgtcattcctggacatcatccaggaaggcaacaccggcctgatgcgcgccgtcgac
aagtacgaataccgccgcggcttcaagttcagcacgtatgccacctggtggattcgccag
gcgatcacgcgagccatcgccgatcatgcccgcaccatccgtattccggtgcacatgatc
gaaacgatgagcaagctgcggaacatcagcaagggcctgatgcaggagctcggccgcgag
ccgaccatcgaagaaatcgccaagaaggcgaagatggccgtcagcgaaacccgccgcgtg
ctgaagatcagccgtcacccgatctcgctcgaccgcccggtcggcgagagcgaagacagc
tacttcggcgacttcattgaagacgagaaggccgagaacccggtcgagtcggcgacgcag
gaaatgctcaaggacaagatcgagcaggtccttaagacgctgacctatcgcgagcgcgag
atcatcaagctccgctacggcatcggcgacggctacacctacacgctcgaagaagtgggc
cggatcttcaaggtcacccgcgaacgcgtgcgtcaggtcgaagccaaggcgatccgcaaa
ctgcagcatccggtccgggcaaggaagctggaaggtttcctaccgggcggagtaacgcag
taa
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