Humisphaera borealis: IPV69_07215
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Entry
IPV69_07215 CDS
T07075
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hbs
Humisphaera borealis
Pathway
hbs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IPV69_07215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbs03400
]
IPV69_07215 (mfd)
Enzymes [BR:
hbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IPV69_07215 (mfd)
DNA repair and recombination proteins [BR:
hbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IPV69_07215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
SHOCT
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOV91139
UniProt:
A0A7M2X0G6
LinkDB
All DBs
Position
complement(1927063..1930680)
Genome browser
AA seq
1205 aa
AA seq
DB search
MANPTPPAAIGRLVAARPLTELARLLIDKGAATASGLWGSSVAAVIAAMRAELRRPILLV
CGHLDEADDLSDDIHLFTGVHPDALPALELGGSLGRVSEEQVSNRLQLLARYAGGIAQDA
VIVAPVQALMQSVPSKDQLKHLIRTLKPGDDMEPEKLIVWLSDHGYNRLEQVEIPGDFAV
RGGIIDVYLPGEHPESIEQVGLCARFDFFGDQIESIKTFDLDSLGSKAPLKEVKLLDLKG
SLPDVGDSVSLFRYLPDETIVVLWAPLEIAEQSKAYQERLPDMKGIYPLNALLKQMQPFP
RLELSQFDQGNVTLMGAGEVPRAALPIQSLQRFETEAKKAIRELAELTETHEVTVFCENE
GEEKRFVELAEMEQPGIGKKMTVALGYLHRGFVWDEEGSREGTAAQRQPLALLGHHELFH
RYEQRRRVKKSIASRPVDSFLDLKSGDYVVHVAHGIAKFVGMQTIAKDGKSEEYLSLRFA
DNATLHVPASKINLIQKYVGGFSGHPTLSRLGSGSWEKQKAKVADAVMDMAAELLDVQAA
RAAEVGHAFGPDTEWQQEFEAEFPYEPTQDQVTGNEEIKGDMMKRRPMDRLLCGDVGYGK
TELAMRAAFKAAEFGKQVAVLVPTTVLAEQHYRSFRERMANYPFSIESISRFKSSKEAKD
ILTRAATGEVDILIGTHRLLSKDVKFADLGLVIVDEEQRFGVTHKERLKQMRKMVDVLTM
SATPIPRTLHMSMLGLRDISSLTTAPQDRRSVVTEVMPFDRNRVKLAMLRELQREGQIYF
VHNRVGDIIEFADNIQQMVPDARIVIGHGQMEEGEMEAAMMKFIRHEADILVSTTIIESG
LDIPNANTIIIDNADRFGLSELHQLRGRVGRWKHRAYCYLLLPADRPVTQVASKRLKAIE
EYSHLGAGFKIAMRDLELRGAGNILGPEQSGHIATVGYEMYCQLLEEATRQLKKEPRAAR
PEAHVELNVTAYIPKTYIPGDRQRMDIYRRLTRCESLEMLAELEKDVKDAFGEPPRQAVI
FFALTEVRLLAQLFGIDSIIRQVPDIVLKVNDGTRASYAMTGAPGTLRVIDDKTIYLRMP
PTFVEPEAALMVMKNLMRQAWDKEKKGEAAVVPGTAPEKPPEPVKKPVPAPAPVAAKPAA
TGKPGKAGKKSQPAEAPGLRPTETEFPPITPKQMADLEKLHSLREIGVLTDSEFELARAR
LLTRK
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcccacccctcccgcggcgatcgggcggctcgttgctgcgcgcccgctcact
gaacttgcccggctcctgatcgataagggtgccgcgacggcttcgggtctgtggggctcg
tcggtcgctgccgtcatcgctgccatgcgcgccgagctgcgccggcccattctgcttgtc
tgtggccaccttgatgaggccgacgatctttccgacgacattcacctctttaccggcgtt
catcccgatgccttacctgcactcgaactcggcggcagccttggccgcgtcagcgaagag
caggtctccaaccgcctgcaactgctggcccgctacgccggcggtattgcccaggatgcg
gtgatcgtcgcgcccgtgcaggcgctcatgcaatccgtgccgagcaaggaccagctcaaa
cacctgatccgcaccctgaagcccggcgacgacatggagccggagaagctcatcgtctgg
ctcagcgatcatggctacaaccgcctggagcaggtcgagatccccggcgacttcgccgtt
cgcggcggcattattgatgtctacctgcccggcgagcaccccgagtcgatcgagcaggtc
ggcctgtgtgcccggttcgatttcttcggcgaccagatcgaatcgatcaagaccttcgac
ctcgattcgctcggctccaaggccccgctgaaagaggtcaagctgctcgacctgaagggg
agcctgcccgatgtcggcgattcggtgagcctgtttcgttacctgccggatgagacgatt
gtcgtgctctgggcgccgttggagatcgccgagcagtccaaggcgtatcaggaacggctg
ccggacatgaaggggatctatccgctaaacgcacttctcaagcagatgcagccgttccca
aggctggagctgagccagttcgaccagggcaatgtcacgctgatgggtgccggcgaagta
ccgcgggcggcgctgccgatacagtcgctgcagcgatttgaaaccgaggcgaagaaggcg
atccgcgagctggccgaactgacggaaacccacgaagtcacggttttttgtgagaacgag
ggcgaagagaagcgattcgtcgagctggccgagatggaacagccgggcatcggcaagaag
atgaccgtcgcgctcgggtatctgcatcgtgggtttgtgtgggatgaggaaggcagccgc
gaaggcacggcggcacaaaggcagcctctcgccctgctgggacaccacgaactcttccac
cgctacgagcagcgccggcgggtaaagaagtcgatcgcgtcacgcccggtcgattcgttc
ctcgatctgaagtctggcgactacgtcgttcatgtcgcccacggcatcgccaagttcgtc
ggcatgcagacgatcgccaaggacggcaagagcgaggagtacctttcgctgcgcttcgcc
gacaacgcgacgctgcacgtcccggcgagcaagatcaacctgatccagaagtacgtcggt
ggcttcagcgggcatccgacgctgtcgcggctgggttcgggcagttgggagaagcagaag
gcgaaggttgccgacgccgtcatggatatggcggcggagttgctcgatgtgcaggcggcg
cgggcggcagaggtcggccatgcctttgggcccgataccgaatggcagcaggagttcgag
gccgagtttccgtacgagcccacgcaggaccaggttaccggcaatgaagagatcaagggc
gacatgatgaaacgccggccgatggaccgcctgctgtgcggcgacgtcggctatggcaaa
acggaactggcgatgcgggcggcgttcaaggcggctgagttcggaaaacaggtcgccgtg
ctggtgccgaccaccgtgctcgctgagcagcattaccgctcgttccgcgagcggatggcg
aactacccgttctcgatcgagtcgatcagccggttcaagagctcgaaggaagccaaagac
atcctgacccgggcggcgacgggtgaggtcgacattctcatcggcacccaccgcctgcta
tcgaaggacgtgaagttcgccgacctggggctggtcatcgtcgacgaagagcagcggttt
ggtgtgacgcataaagagcggctgaagcagatgcgcaagatggtggatgtgctgaccatg
tcggcaacgccgatcccgcgaacgctgcacatgtcgatgctggggctgcgggatatcagc
agtctgacgaccgcgccgcaggaccgccgcagcgtggtgacggaggtcatgccgttcgac
cggaaccgggtgaagctggcgatgttgcgtgagctgcagcgtgaggggcaaatctacttc
gtacacaatcgcgtgggggacatcatcgagttcgctgacaacattcagcagatggtgccc
gatgcccggatcgtcatcggtcacgggcagatggaagaaggggagatggaggcggcgatg
atgaagttcatccgccatgaggccgacatcctggtgtcgacgacgatcatcgagagcggc
ctggatatcccgaacgccaacacgatcatcatcgacaacgccgaccgcttcgggctgagc
gagttgcaccagctgcgcgggcgcgtcggccggtggaagcaccgggcgtactgctatctg
ctgctgccggccgaccggccggtgacacaggtggcgagcaagcggctgaaagcaatcgag
gaatacagccatctgggcgcgggcttcaagatcgcgatgcgcgatctggagctgcgtggg
gccggtaacatcctcggccccgagcagagcggccacatcgcgacggtgggttacgagatg
tattgccagttgctggaagaggcgacgcggcaactgaagaaagagccgagggcggcgcgg
ccggaagcgcacgtcgagttgaacgtgacggcgtacatccccaagacgtacatccccggc
gaccgccagcgcatggacatctaccgccggctgacgcggtgcgagagcctggagatgctc
gccgagctggagaaggacgtgaaggacgccttcggcgagccgccacggcaggcggtgatc
ttcttcgcgctgaccgaggttcggctgctggcgcagttgttcggcatcgacagcatcatc
cgacaagtgccggacatcgtgctgaaggtgaacgacggcacgcgggcgagctacgccatg
accggcgcgccgggcacgctgcgcgtgatcgacgacaagacgatctacctgcgcatgccc
ccgacgtttgttgagcctgaagcggcgctgatggtgatgaagaacctgatgcggcaggcg
tgggacaaggagaagaagggggaggcagcggtggtgccgggcaccgcgccggagaaaccg
ccggagccggtgaagaaacccgtcccggcacccgcaccagtcgcggccaagccggcggcg
acaggcaagccaggcaaagccgggaagaagtcgcagcccgccgaagcgccaggattgcgt
ccgaccgagacagagttcccgcccatcacgccgaagcagatggcggatttggagaagctg
cattcgctgcgggagatcggcgttttgacggattcggagtttgaactggcgcgggcgagg
ttgctgacaagaaagtaa
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integrated database retrieval system
