Humisphaera borealis: IPV69_08445
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Entry
IPV69_08445 CDS
T07075
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hbs
Humisphaera borealis
Pathway
hbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPV69_08445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbs03019
]
IPV69_08445
03009 Ribosome biogenesis [BR:
hbs03009
]
IPV69_08445
Enzymes [BR:
hbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IPV69_08445
Messenger RNA biogenesis [BR:
hbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IPV69_08445
Ribosome biogenesis [BR:
hbs03009
]
Prokaryotic type
rRNA processing factors
IPV69_08445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QOV91366
UniProt:
A0A7M2X0U6
LinkDB
All DBs
Position
2290024..2293395
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AA seq
1123 aa
AA seq
DB search
MAKEMLINVSEGEECRIALVEDGRLEELYIERTSSTSHVGNIYKGKVTNVEASIQAAFID
FGLGRNGFLHVSDLLPDYFGKKGEDVEEYVGKKMARRDRPPIQRCLRRGDEITVQVIKEG
IGTKGPTLSSYLSVSGKMLVMMPGVSGRGVSRKIEDDQERRRLKQILDSLDPPEDCGFII
RTEAVGKSKTDIERDLKYLARLWEQMKKKRDASNGPTELYTEGDLVTRTIRDVFNTDVDR
VIVDNADVAERVRDVVRLTSPKGQDKVEVHDSPIPMLHKYGIERDIELMYSRHVPLPSGG
SLVIDSTEAVVAIDVNSGKFRDHSDAETTAFKTDMEAADEICRQLKLRDLGGVIICDFID
LRYERHRRDLEQRIVDNFKNDRAKTKVLRMSQFGIIEITRQRMRPSLKRSVYFDCPHCKG
AGLVKTPESMSLDVMRRLAIAMNDLKVFRAELAVCGDVAIYLNNKKRRALADLEDRTKKR
VLVKTDPTLGIDEMRLDLYDNRDGMVLLPELSDVLTSHPHTSQLHTRPPGKHAPGSPGGG
RGDARRGSGSRSPEQRRQERERELADDRLEFDDEEREQHGEPRRDERPRDEQGREERGRD
ERGRDERKPEGRGNRDRKEPRRDDSRRDEPRRDEPRRDDRPARPDNRGGPRDRQSPQQGG
RGEARPDRQGERRDGGGREGGGRDGGLRDGGPRDGAARDGGQRDGRRDQRDPRDRDRPQR
QDNREDSRGPRNDAPRGERPQGKPPRAELPAGGPPADVAGDVHGEGSGENGGENGGENGG
RRRRRRRRRGRGRGQGQGQGPNSNEPLTAFGDYPEEGDRPAGEAPFGDEDQYEEGAEAGE
GEDAEEVAQSDDGRRDNRDARNDRGGQRNDRREFPKPPPRQADEPSGPTDEHRDDDDDLG
PAPEPVESGYEEEYDYGDDEEDADTSEDRPADEGVRADVAARDQREPGEPAVPEVTDTPR
VEVTAESQAPVVQAPAEAEAETPADGEKPRRRGTSGRAKSGAAAAKKPAATGRGGKAAPA
KPAAKAAPAKAKGKATAAPAASKKRTGKKSDDKPTDAPRARIAEASPAVVKRRGADKHLV
AEPETEAESTPEVEVEPIADIAPPTPRRSRTYRDLDAIPDDYD
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
gtggccaaagaaatgctgattaacgtctccgagggcgaagaatgccgaatcgccctcgtc
gaagacggccgacttgaagagctttacatcgaacgcaccagttcgacctctcacgtcggc
aacatctacaagggaaaagtcaccaacgtcgaagcgagcatccaggccgcattcatcgac
ttcggcctcggccgcaatggcttcctccacgtttccgacctgctgcccgactacttcggt
aagaagggcgaagacgtcgaggagtacgttggcaagaagatggcccgccgcgaccggccg
cccattcaacgttgcctccgccgaggcgatgaaatcaccgtgcaggtaatcaaggaaggc
atcggcaccaaggggccgaccctcagcagctacctgtcggtcagcggcaaaatgctggtg
atgatgccgggtgtcagcggtcgtggcgtcagccgcaagatcgaagacgaccaggaacgc
cgccggctcaagcagatcctcgattcgctcgatccgccggaagactgcgggttcatcatc
cggaccgaagcagtcggcaagagcaagaccgacatcgagcgcgacctaaagtacctcgct
cggctctgggagcagatgaagaagaagcgggacgcgagcaacggcccgaccgagctctac
accgaaggcgacctggtcacccggaccatccgcgacgtgtttaacaccgatgtcgatcgc
gtgatcgtcgacaacgccgatgtcgccgagcgcgtgcgcgatgtcgtccgcctgacgagc
cccaagggccaggacaaggtcgaggttcacgacagcccgatcccgatgctgcacaagtac
ggcatcgagcgggacatcgagctgatgtacagccggcacgtgccgctgcccagcggcggc
tcgctggtgattgactcgaccgaggccgtcgtggcgatcgacgtcaacagcggcaagttc
cgcgaccactccgacgccgagaccaccgccttcaagaccgacatggaagcagccgacgag
atttgccggcagctcaagctgcgggatctgggcggcgtgatcatctgcgacttcatcgac
ctgcgctacgagcggcaccgccgcgatctggaacagcgcatcgtcgacaacttcaagaac
gaccgcgccaagaccaaggtgcttcggatgagccagttcggcatcatcgagatcacccgt
caacggatgcggccttcgctcaaacggtcggtgtacttcgattgcccgcactgcaagggt
gccgggctcgtcaagacgcccgaaagcatgagcctggatgtcatgcgccgcttggcgatc
gcgatgaacgacctgaaggtgttccgcgcggagctggccgtctgcggcgacgtggcgatc
tatctgaacaacaagaagcgccgggcgctggccgacctggaagaccgcacgaaaaagcgc
gtgctggtgaagaccgacccgacgctcggcatcgacgagatgcggctcgatctgtacgac
aaccgcgacggcatggtgctgctgccggaactcagcgacgtgctgacgagccacccgcac
accagccagttgcacacccgcccgccgggcaagcacgccccgggcagccccggtggcggt
cgcggcgacgcgcgtcggggtagcggcagcaggtctcccgaacagcgacgccaggaacgc
gaacgcgagctggccgatgaccgcctggagttcgacgacgaggaacgtgaacagcacggc
gaaccacgtcgcgacgaacgtccgcgcgacgaacagggtcgggaagagcggggccgtgac
gaacggggccgtgacgaacgcaaacccgaaggtcgcggcaaccgcgaccgcaaagagccg
cgccgagatgattctcggcgtgacgaaccgcgacgggatgaaccgcgcagggacgatcgt
ccggcccggccggacaaccgaggcgggccacgcgatcgccagtcgccgcaacagggcggc
cggggcgaagcgcgtcccgaccgccagggcgaacgccgcgatggcggcgggcgcgaaggt
ggcggccgtgacggcggtctccgtgatggcggtccccgtgacggtgcggcccgagatggc
ggccagcgagacggccgacgcgaccagcgcgatccccgggatcgcgaccgcccgcagcgg
caggacaatcgcgaagacagccgcggaccccgaaacgacgccccgcgcggcgaacgcccg
cagggcaagccgccccgcgccgaactgccggccggcggcccgcccgccgacgtcgcaggc
gatgtccatggcgaaggtagtggtgagaacggcggcgagaatggaggcgagaacggcgga
cgtcgtcgtcgccgccgtcgtcgtcgcggtcgcggccgaggccagggtcagggccaggga
ccgaactcgaatgagccgttgacagcgttcggcgactacccggaggaaggcgaccgcccc
gccggcgaagccccgttcggcgacgaagaccagtacgaagaaggcgccgaagccggtgaa
ggcgaggacgccgaggaagtcgcccagagcgacgacggtcgccgcgacaaccgcgacgcc
cgtaacgatcgaggcggccagcgcaacgatcgccgcgagttccccaagccgccgccccgt
caggccgacgagccgtccggtccgacggacgaacatcgcgatgacgacgacgacctcggt
cctgcacccgagccggtcgagtcgggatatgaggaagagtacgactacggcgacgacgaa
gaagacgccgatacgtcggaagatcgcccggcggacgaaggcgttcgtgccgacgtcgca
gcgcgtgaccaacgagagcccggcgaaccggctgtacccgaagtgaccgatacgccccgc
gtggaggtcacggccgagtcgcaagccccggtcgtccaagctccggcagaggccgaagcc
gagacacccgccgacggcgaaaagccccggcgacgaggcacgtcgggtcgagccaagtcc
ggtgcagcggcggcgaagaagccggccgcgaccggtcgaggtggcaaggctgccccggcc
aagccggcggccaaagccgctccggcaaaagccaagggcaaggccacggcggcaccagcg
gcttccaagaagcggacgggcaagaagtcggacgacaagccgacggatgcaccgcgtgcc
cggatcgccgaggcgtcaccggcagtggtaaagcgtcgcggtgccgacaagcacctcgtc
gccgagcccgagaccgaggccgagtcgacgcccgaagtcgaagtcgaacccatcgccgat
atcgccccgccgaccccacgccggtcgcggacgtatcgtgatctcgacgcgatcccggac
gactacgattga
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