Humisphaera borealis: IPV69_19160
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Entry
IPV69_19160 CDS
T07075
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hbs
Humisphaera borealis
Pathway
hbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IPV69_19160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbs03019
]
IPV69_19160
Enzymes [BR:
hbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IPV69_19160
Messenger RNA biogenesis [BR:
hbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IPV69_19160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DEDD_Tnp_IS110
Utp25_C
ERCC3_RAD25_C
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QOV88351
UniProt:
A0A7M2WU77
LinkDB
All DBs
Position
5136326..5138014
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AA seq
562 aa
AA seq
DB search
MLFADLKLSPLILRALEIEGYEVATPIQAQAIPHVLAGKDVLGSAQTGTGKTAAFALPIL
NKIAEKAASPTDGRRRPSALILCPTRELAAQIGAGFKAYGREVKARYSVIFGGVSQGIQI
DSLRSGVDVIIATPGRLLDLMNQGQVDLSYIQTLVLDEADRMLDMGFIHDIKRIIAKLPT
KKQTLMFSATMPNEIKRLADNLLKHPVTVSVAPVSQVADRIDERVYFVAKATKPQLLAHL
VKDLPMHRAIVFTRTKHGADRVVRKLLAHGIESAAIHGNKSQNNRSRALSQFKNDKIGVL
VATDIAARGIDIDGVTHVVNYDLTHEPETYVHRIGRTARAGASGAAVSFCDHDERQNLTA
IERLVKRKIAVAPTPTDDLPAAVADPRDDRRNRDDDRPSRHSAGRGVRSNESGGERHSSG
GERRAFEPRRHESRPPTGERRSGPSGSSHRSSGAQPREFSPAGKPALRTSHGPSGHGGGG
HGKPSHPRAPHAAGSSKPHMRNSAGAHPREFPSSGPARHPLHAVAGNSSGGYRSGGPAKK
SYRKGPGRPTGRAPVSGGRSGR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgctgtttgctgatttgaagttgtctccgcttatcctgcgcgctctcgaaatcgagggc
tacgaagttgccacgccgattcaggcacaggcaattccccacgttctggccggcaaggat
gtcctgggctctgcccagaccggcaccggcaagaccgcggcctttgccctgccgattctg
aacaagattgccgagaaagcggcctctcccaccgacggccgtcgccgaccgtcggcgctg
atcctctgtcccacccgcgaactggccgcccagatcggcgcaggcttcaaggcttacggc
cgagaagtgaaggcccgctacagcgtgatcttcggcggtgtcagccagggcattcagatc
gattcgctccgctcgggtgtcgatgtcatcatcgccacgcccggccggctgctcgacctg
atgaaccaggggcaggttgacctgtcatatatccagacgctcgtcctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgaatcatcgccaagctgccgacc
aagaagcagacgttgatgttctcggccacgatgccgaacgaaatcaagcgtctcgccgac
aacctgctgaagcaccccgtcacggtgtcggtggcgccggtgtcgcaggtcgccgaccgc
attgacgagcgtgtctacttcgtcgccaaggcgaccaagccgcagctgctggcccacctc
gtgaaagacctgccgatgcaccgggcgatcgtcttcacccgcaccaagcacggcgcagac
cgcgtcgtccgcaagctgttggcccacggtatcgagtcggccgcgatccacggcaacaag
agccagaacaaccgcagccgcgccctcagccagttcaagaacgacaagatcggcgtgctg
gtggcgacggacattgccgcccgcggcatcgatatcgacggcgtcacccacgtggtcaac
tacgacctgacgcacgaacccgaaacctacgtgcatcgcattggccgaacggcccgcgcc
ggtgccagtggggcggctgtcagcttctgcgaccacgacgaacgccagaacctgacggcg
atcgaacggctggtcaagcggaagatcgcagtggccccgacgccgaccgacgaccttccg
gcggctgtagcggacccgcgcgacgaccgccgtaaccgcgacgacgaccgtccgtcgcgt
cactctgccggacgcggcgtccgttcgaacgaatcgggcggcgagcgtcattcctccggc
ggcgagcgccgggcgtttgagccgcgtcgtcatgaatcccgtccgccgaccggcgaacgc
cgttctggaccttcaggatcgtcgcatcgttccagcggggcccagccgcgcgagttttct
ccagccggcaagccggcactgcggacttcgcacggtccgtcgggtcacggcggtggcggg
cacggcaagccatcgcatccgcgggcaccccacgctgcgggaagctccaagccgcacatg
cgtaacagcgccggtgctcatccgcgtgagttcccgtcgagcggcccggcccgccatccc
cttcacgccgtcgccggcaactccagcggcggttaccgatcgggcggccccgcaaagaag
tcctaccgtaaaggtccagggcgaccgacgggccgagcaccggtttccggcggtcgatcg
ggacggtaa
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