Humisphaera borealis: IPV69_22555
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Entry
IPV69_22555 CDS
T07075
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hbs
Humisphaera borealis
Brite
KEGG Orthology (KO) [BR:
hbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hbs03016
]
IPV69_22555
Enzymes [BR:
hbs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IPV69_22555
Transfer RNA biogenesis [BR:
hbs03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IPV69_22555
Prokaryotic type
tRNA splicing ligases
IPV69_22555
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QOV88977
UniProt:
A0A7M2WTX7
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All DBs
Position
5992637..5993827
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AA seq
396 aa
AA seq
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MSSDNEDLPASVTSVASAKADPTAPTLATWLAWPLDTPVKNAIDRALHADDVVHVAVMPD
VHLATDVCVGTAMATRRLVYPSAVGGDIGCGMLAIAFDATADLLQDADRAGQLLRAIGRR
VPSHRRHRTARLPMPVDCVASDLSHPALVAAAGDDGGLQFGTLGGGNHFVELQADEDDRL
WLMIHSGSRAMGQVVRSHHVARATRGATMPLLDTETDLGQAYLNDQDWARRYARGNRIAM
AEQVCEAIHELTGVTRIESSLIECDHNHVRREAHFGESLLVHRKGATPADDGLAGVVPGS
MGTTSVHIVGRGEPQSLRSSAHGAGRQMSRTVARERFGRHEVRRQMADVWYDPRILDAMR
EESPKAYKDLRAVLKAQEPLMKVTRRLRPLLVYKGS
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgacaacgaagacttgcccgcgtccgtcacgtccgtcgcgtccgccaaggcg
gaccctacagcgccgacactcgccacttggctcgcgtggccgctggacacaccggtgaag
aacgcgatcgaccgcgccctgcatgccgacgacgtcgttcatgttgccgtcatgccggac
gttcacctggcgacggatgtctgcgtcggcaccgcgatggcgacccgccggctggtctac
ccgtcggcggtggggggcgacatcggctgcggcatgctcgcgatcgcattcgacgcgaca
gccgacctgctgcaagacgccgatcgcgcggggcaactgctccgcgcgatcggccggcgg
gtgccgtcgcaccggcggcatcgcacggccaggttgccgatgccggtcgattgcgtcgca
agcgatctctcgcatcccgcactcgtcgccgccgccggcgacgatggcggcctgcagttc
gggacgctcggcggaggcaatcacttcgtcgaacttcaggccgatgaagacgaccgcctg
tggctgatgatccacagcggctcccgcgcgatgggccaggtcgtgcgctcgcaccacgta
gcccgcgcgacgcggggcgcaaccatgcccttgctggatacggaaacggacctgggccaa
gcctacctcaacgatcaggactgggctcgccgctatgcccgcgggaaccgtatcgcgatg
gcggagcaggtgtgcgaagcgatacacgaactgaccggcgtgacgcgaatcgaatcgtca
ctcatcgaatgcgatcacaaccacgtgcggcgggaagcgcatttcggcgagtcgctgctg
gtgcaccgcaaaggggcgacgcccgccgacgacggcctggccggcgtggtgccggggtcg
atggggacaaccagcgttcacatcgtcggacggggtgagccgcagtcgctccgcagcagc
gcccacggcgcgggaaggcaaatgtcgcgaacggtcgcccgcgagcgcttcggacgtcat
gaggtgcgcaggcagatggctgacgtctggtacgacccgcgaattcttgacgcgatgcga
gaggaatcgcccaaggcgtacaaggacctgcgcgcggtgctcaaggcgcaggaaccgctg
atgaaggtgacaaggcgactgcggccgctgctcgtttacaaggggagttga
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