Hyperthermus butylicus: Hbut_0572
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Entry
Hbut_0572 CDS
T00468
Name
(GenBank) RNase PH-related exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
hbu
Hyperthermus butylicus
Pathway
hbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hbut_0572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbu03019
]
Hbut_0572
Messenger RNA biogenesis [BR:
hbu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Hbut_0572
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Hbut_0572
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
CofD
Motif
Other DBs
NCBI-ProteinID:
ABM80432
UniProt:
A2BKC1
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All DBs
Position
543736..544722
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AA seq
328 aa
AA seq
DB search
MSITPSFQPVIPKLKKHTMETLLSRGVRLDGRKLDETRPVEITPGYIDRAEGSALVKLGQ
TVVLAGVKTDIVAPFPDTPNEAVLVVHAEFVPLASPTFEPGPPDENAIELARVIDRSLRE
IKAVALDKLVLEPGKHVWRLYVDLYILNHDGNLFDASMLAAMAALMTTRLPAAVKTEDGY
TVDRSKFTGLVPVNHKVVTVTIAKLSNRLIVDPTYEEEQVADTRLVVAVSDDGRIAGIQK
TGMGDLTYKEVLTAVAIALNKAQVYLKALEEKVVPYRAELEKKLAEQAAGATPAAAVPAP
AREHEEVVEQAESAGEETVEQSYEEERD
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgagtatcacgccctcattccaaccagttattcccaagctcaagaagcatactatggag
acgctgctctcgcgcggcgttaggcttgacggtaggaagctggacgagacaaggccggta
gagataacgccgggctacattgatagggctgagggctcggcactagtcaagctcggccag
acagttgtattagcgggagttaagactgatatcgttgccccgttccccgatacgcctaat
gaggctgtgctagtagttcacgccgagttcgtgccgctggcatcgccaacctttgagcca
ggcccaccagacgagaacgctattgagcttgcaagagttattgatagaagtctacgagaa
atcaaggctgttgcgctggataagcttgtattggagccgggtaagcatgtgtggaggctc
tatgtggatctctacatactaaaccatgacggcaacctatttgatgcctctatgctggca
gcaatggctgcactcatgactacacggctgccagcagcagttaagaccgaggacggctac
actgtggataggtcgaagtttacaggcttggtgccagtgaaccataaggttgtaacggta
acgatagcaaagctgagtaataggctcatagttgacccgacctatgaggaggagcaggta
gccgatacaaggctcgtagtagcggttagcgacgatggcaggattgcgggtatacagaag
acaggtatgggtgacctcacctacaaggaagtactcactgcggtagctatagcgctaaac
aaggctcaagtctacctcaaagctcttgaggagaaggttgttccctaccgtgcagagctc
gagaagaagctagctgagcaggctgctggggctactcctgcagcagcggtaccggcacct
gctagggagcatgaagaagttgtagagcaggctgagtccgctggcgaggagaccgttgaa
cagagctacgaggaggagcgggactag
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