Halarcobacter bivalviorum: ABIV_0380
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Entry
ABIV_0380 CDS
T06437
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hbv
Halarcobacter bivalviorum
Pathway
hbv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hbv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABIV_0380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbv03021
]
ABIV_0380 (rpoC)
03400 DNA repair and recombination proteins [BR:
hbv03400
]
ABIV_0380 (rpoC)
Enzymes [BR:
hbv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABIV_0380 (rpoC)
Transcription machinery [BR:
hbv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABIV_0380 (rpoC)
DNA repair and recombination proteins [BR:
hbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABIV_0380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
FOP_dimer
Motif
Other DBs
NCBI-ProteinID:
AXH11401
UniProt:
A0AAX2A746
LinkDB
All DBs
Position
372679..377217
Genome browser
AA seq
1512 aa
AA seq
DB search
MSNNEKVLEPIEIKELERPQDFSAFQLRLASPEKILSWSSGEVKKPETINYRTLKPERDG
LFCAKIFGPVKDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRHRMGHIDLVSPVAHIW
MVSSLPTRIGTLLGVKLKDLERVLYYEAYIVSASGEAYYDNEKTKKVNKYDILNEEQYRT
ISDLFDHTGFEANMGGEIIRELLENLDLIELLTVLKSEMSATKSEAKRKTIVKRLKVVEN
FINSGNKPEWMMLTQLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNNRLKRLTELD
APEIIIRNEKRMLQEAVDALFDNGKTANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPSLNMDQCGIPKKMALELFKPHLMAKLEEKGYATTLKSAKRLIESEAN
EVWECLNEIVDEYPILLNRAPTLHKLSIQAFHPVLIDGKAIQLHPLVCAAFNADFDGDQM
AVHVPLSQEAIAEAKILMMSSMNILLPASGRAIAVPSQDMILGIYYLSLEKDGVKGEHKL
VTDVNEAKIALEMGQVDLHAKIRTKVEDKVIHTTIGRLIIKEILPDFVPTTLWNKILKKK
DIGTLVDYVYKYGGYKVTPIFLDDLKNLGFRYATEAGISVSIDDIKVPETKPEHIAKSKK
DVIEVQKQFAQGLLTEQERYNKIIDIWTEVNNKLGSEMMDLVQSDKDGFNSIYMMADSGA
RGSAAQIRQLSGMRGLMAKPDGTIIETPIISNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVRITNEDCGTHEGIEITDISSGNELIESLEERITGRVIAEDIID
PISNEILFAEGTLITEDDAKVVAEAEVKSVVIRTPLTCKEEIGLCSKCYGLNLGEQRKAT
PGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASATQTERELRADKEGFIRYYNIRTYTDRN
GRKIVSNRRNAGILLVEPKINAPFKGKVTVETIHEETILTITNGKEEKKYYLRKNDVAKP
NELAGVSGKIEGKLYLPYKDEFEVEENESIVEMIKDGWNVPNRIPFASVLKVEDGAPITS
TIVSGAKGMVKYYKLKGDYLERRHDIKAGEAVNEKGLFAVIVDVDDREALRHYVARGSVV
ELDDNSSVEKDSVIANPASAEQVVIAEWDPYSNPSIAEEKGKIAFEDVIPGVTVAEQFDE
LTGTSKLVVNEYIPAGYKPTIILATENKELLRYSLEPKTSLFVNEGQEVEVADILGKTPK
ATQKSKDITGGLPRVSELFEARRPKSIAVLASFDGMVSFGKPLRNKQRIIVTDENANKAE
YLVEKSKQILVHEGEFVHAGEALTDGQVSPHDVLRILGEKALHYFIVSEVQQVYRSQGVN
IADKHIEVILSQMLRQVSILDGGDTKFIIGDMVSKKRFQAENARIIKLGGKPAIAEPLLL
GITRAAVTSDSIISAASFQETTKVLTEAAISAKMDMLEDLKENVVIGRTIPVGTGLYKDK
KVKFSSTEEDSE
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgagcaataatgaaaaagtattagaacctattgaaattaaagagttagaaagaccgcaa
gatttttctgcttttcaattaagactagcaagcccagaaaaaattctttcttggtcttct
ggtgaggttaaaaaaccagaaactattaactatagaacattaaaaccagagagagatggt
cttttttgtgcaaagattttcggacctgtaaaggattacgaatgtctttgtggtaaatat
aaaaagatgagatacaaaggtgttgtatgtgaaaaatgtggtgttgaagtaacttcatct
aaagttagaagacacagaatgggtcacattgacttagtatctccagttgctcatatctgg
atggtatcttctttaccaacaagaattggtacattacttggtgttaaattaaaagactta
gaaagagtactttattatgaagcatatattgtttctgcatcaggtgaagcatactatgac
aacgaaaagactaaaaaagttaataaatatgatattttaaatgaagaacaatacagaact
atttctgatttatttgaccacactggtttcgaagcaaacatgggtggagaaataattaga
gagctactagaaaatcttgatttaattgaattattaactgtattaaaatctgaaatgtct
gctactaagtctgaagcaaaaagaaagactattgtaaaaagattaaaagtagttgaaaac
tttattaactctggaaataaacctgagtggatgatgttaactcaattaccagtacttcca
cctgatttaagacctcttgtatcattagatggtggtaaatttgctgtttcagacgttaat
gacctttatagaagagttattaacagaaataatagacttaagagattaacagaacttgat
gctcctgaaatcattattagaaatgaaaaaagaatgcttcaagaagcagtagatgcatta
tttgataatggtaaaactgcaaatgctgttaaaggtgcaaacaaaagaccacttaaatct
ttatctgaaatcattaaaggtaaacaaggaagatttagacaaaacttacttggaaaaagg
gttgacttctctggaagatctgtaattgttgttggaccatctttaaatatggaccaatgt
ggtattcctaagaaaatggctttagagctattcaaaccacacttaatggctaagttagaa
gaaaaaggttatgcaactactttaaaatctgcaaaaagattaattgagtcagaagcaaat
gaagtatgggaatgtttaaatgaaatcgttgatgaatatccaattttattaaacagagct
ccaactcttcacaaactgtctattcaagctttccacccagtattaattgatggaaaagca
attcagttacacccattagtttgtgcggcattcaacgccgacttcgatggtgaccaaatg
gcagttcacgtaccgttatcacaagaagctattgcagaagctaagattcttatgatgtca
tctatgaacattcttttaccagcatctggtagagctattgctgtaccatcacaagatatg
attttaggtatttactacctatcattagaaaaagatggtgtaaaaggtgaacataaatta
gttacagatgtaaatgaagctaaaattgcattagagatgggtcaagttgacttacatgca
aaaattagaacaaaagtagaagataaagtaattcatacaacaattggtagattaattatt
aaagaaatcttacctgattttgtaccaactactttatggaataaaattttaaagaaaaaa
gatattggaacattagttgactatgtttataaatatggtggatataaagtaactccaatt
ttcttagatgatcttaaaaacttaggttttagatatgcaactgaagctggtatttctgta
tcaattgatgatattaaagttccagaaactaagccagaacatattgctaaatctaaaaaa
gatgtaattgaagttcaaaagcaatttgcacaaggtttattaactgagcaagaaagatat
aataaaattattgatatctggacagaggttaataataaacttggttctgagatgatggat
ttagtacaatcagataaagatggattcaactctatttatatgatggctgactcaggagca
aggggttctgcagctcagattagacagttatcaggtatgaggggtcttatggctaaacct
gatggtactattattgaaacaccaattatttcaaactttagagaaggtctaaacgtactt
gagtactttatttctactcacggtgctagaaaaggtcttgcggatacagctttaaaaaca
gcgaatgctggatacttaacaagaaagttaatcgacgtatctcaaaacgtaagaatcaca
aatgaagattgtggtactcacgaaggtattgaaattacagatatctcttctggtaatgag
ttaattgagtctttagaagaaagaattactggtagagtaattgcagaagatattattgat
cctatttcaaatgaaattttatttgcagaggggacattaattactgaagacgatgcaaaa
gttgttgcagaagctgaagttaaatctgttgtaattagaactccattaacttgtaaagaa
gagattggtttatgttcaaaatgttatggtctaaacttaggtgagcaaagaaaagctact
ccaggtgaggctgttggtgttgttgctgctcaatcaattggagagccaggaacacagctt
acacttagaacattccacgttgggggaacagcatctgcaactcaaacagaaagagagtta
agagctgataaagaaggtttcattagatactacaacattagaacatatactgatagaaat
ggtagaaaaattgtttctaacagaagaaatgctggtatcttattagttgaaccaaaaatt
aatgcaccatttaaaggtaaagtaacagttgagacaattcacgaagagacaatcttaact
attacaaatggtaaagaagagaagaaatattacttaagaaagaatgacgttgctaaacca
aatgagttagcaggtgtatctggtaaaattgaaggtaaattatatcttccatacaaagac
gaatttgaagttgaagagaatgaatctatcgttgagatgattaaagatggatggaacgtt
ccaaacagaattccttttgcttctgtattaaaagttgaagatggagctcctattacatct
acaatagtttctggtgctaaaggtatggttaaatactataagcttaaaggtgactattta
gaaagaagacatgacattaaagctggtgaagctgtaaatgaaaaaggtctatttgctgtt
atcgttgatgttgatgatagagaagctttaagacactatgtagcaagaggttctgtagtt
gaattagatgataactcttcagtagaaaaagattcagttattgcaaatcctgcaagtgct
gagcaagtagttattgctgagtgggatccatattcaaacccatctattgcagaagaaaaa
ggtaaaattgcatttgaagatgttattccaggtgtaacagttgctgagcaatttgatgag
ttaacaggtacttctaaattagttgttaatgagtatatccctgctggttataaaccaaca
attattcttgcaactgagaataaagagttattaagatactctttagagccaaaaacttca
ttatttgtaaatgaaggtcaagaagtagaagttgctgatattcttggtaaaacaccaaaa
gcaactcaaaaatctaaagatattactggaggtcttccaagagtatctgaattatttgaa
gcaagaagaccaaaatcaattgctgttcttgcatcatttgatggtatggtttcttttggt
aaacctttaagaaacaaacaaagaattattgttactgatgaaaatgctaataaagcagag
tatttagtagagaagtctaaacaaattttagtacacgaaggtgagtttgttcatgctggt
gaggcattaactgatggtcaagtttctcctcatgatgtattaagaattttaggtgaaaaa
gcattacattactttattgtatctgaagtacaacaagtatatagatctcaaggggtaaat
attgctgataaacatattgaggttattttatctcaaatgttaagacaagtttctatctta
gatggtggagatactaagtttattattggggatatggtttctaagaaaagattccaagca
gaaaatgcaagaatcattaaattaggtggtaaaccagcaattgctgaaccattattactt
ggtattacaagagctgctgtaacatcagactctattatctctgcggcatcattccaagag
actactaaagtattaacagaagctgctatttctgctaagatggatatgttagaagactta
aaagaaaacgtagttattggtagaacaattcctgttggaactggtctatataaagacaaa
aaagttaaattttcttcaactgaagaagattctgagtaa
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integrated database retrieval system
