Halarcobacter bivalviorum: ABIV_2546
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Entry
ABIV_2546 CDS
T06437
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hbv
Halarcobacter bivalviorum
Pathway
hbv03410
Base excision repair
hbv03430
Mismatch repair
hbv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABIV_2546 (recJ)
03430 Mismatch repair
ABIV_2546 (recJ)
03440 Homologous recombination
ABIV_2546 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbv03400
]
ABIV_2546 (recJ)
DNA repair and recombination proteins [BR:
hbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ABIV_2546 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ABIV_2546 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABIV_2546 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
HypF_C_2
CobU
Motif
Other DBs
NCBI-ProteinID:
AXH13517
UniProt:
A0AAX2A8L3
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All DBs
Position
2580743..2582308
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AA seq
521 aa
AA seq
DB search
MSKVTKDRLYELLSARHENNPYSRLAHIPSPDSFKDIKKASLRIKKALLENETITIVGDY
DVDGVVSTTIIVDFFKKIGKTVNYIIPNRFEHGYGLSPKIVDMIEEGLVITVDNGISACK
AAKLLKEKNIDLIITDHHTVGEEIPEAFAIINPKQKECTFPFKDICGAQVAWYLCAAIKK
EISADVNLQEFFDLLCVAIIADIMPMTSLNYTMVKHGLKKIKDSSRPAFKKINEMISKEV
FVSDDIGFTIAPKINSAGRMEDASIALNFLLASSEYEANDALQLLEELNCFRKNLQEEIS
QKATNATNPEENAVIVWGEGWHEGVIGIVASKLSNAFKKPAFIFSINNGIAKGSARANAN
INLHTIITETSDLLLGFGGHKNAAGLSLKAENLEEFKNRINKTLENHKKELHIEHDVLGE
LDVSSVDIEFLNIIEQFEPYGLKNHRPIFSISNSQIIKSELFGKDKNHLKLTLNSDGFLF
EAIKFYCDEKLDYSNISLVVSVNKNEFRGQISPQFLIQDIL
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaggtaactaaagaccgactttacgaactattatcagcaagacacgagaataat
ccctattctcgacttgcacatataccctcacctgatagttttaaagatataaaaaaagcc
tctttacgaataaaaaaagccttacttgaaaatgaaacaataacaattgtaggtgactat
gatgttgatggtgttgtttctactacaataatagttgatttctttaaaaaaattggaaaa
actgtaaactatatcattcctaatcgttttgaacatggatatggattaagtcctaaaatt
gttgacatgatagaagaaggtttagttataactgtagataatggtatttcagcatgtaaa
gctgcaaaacttctaaaagaaaaaaatattgatttaataattactgaccatcatacagta
ggagaagaaatcccagaggcttttgcaattataaatccaaaacaaaaagagtgcactttt
cctttcaaagatatttgtggagcgcaagtagcttggtatctttgtgctgcaataaaaaaa
gagataagtgcagatgttaaccttcaagagttttttgatttactttgtgttgcaattatt
gctgatattatgccaatgacaagtcttaactatacaatggttaaacatggactaaaaaaa
attaaagattcttcaagacctgcttttaaaaaaatcaatgaaatgatttctaaagaagtt
tttgtttcagatgatattggttttactattgctcctaaaataaatagtgcaggaagaatg
gaagatgcttcaattgcactaaattttttattagcttcttctgaatatgaagcaaatgat
gctttacaattattagaagagttaaattgttttagaaagaatctacaagaagagatttca
caaaaagctacaaatgcaactaatccagaagagaatgcagttattgtttggggagagggt
tggcatgaaggagtaataggaattgttgcttcaaagctatcaaatgcttttaaaaaacct
gcttttatcttttctattaataatggaattgcaaaaggaagtgctagagcgaatgcaaat
ataaatctccatacaataattacagaaacttctgatttattattaggttttggtggccat
aaaaatgcagctggattatctttaaaagctgaaaatttagaagagtttaaaaatagaata
aataaaactcttgaaaatcataaaaaagaacttcatatagaacatgatgttttaggagaa
ttagatgtttcttctgttgatattgagtttttgaatattatagaacagtttgaaccttat
ggacttaaaaaccatagacctatttttagtatctcaaactctcaaattataaaatcagaa
ctatttggaaaagataaaaatcatttaaaattaactctaaatagcgatggttttttattt
gaagcaattaagttttactgtgatgaaaaacttgattattcaaatatcagtttagtagtt
tcagtaaataaaaatgaatttagaggacaaataagtcctcaatttctaattcaagatatt
ttataa
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