Helicobacter pylori PeCan18: HPPC18_00455
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Entry
HPPC18_00455 CDS
T02036
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hca
Helicobacter pylori PeCan18
Pathway
hca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hca00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPPC18_00455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hca03021
]
HPPC18_00455
Transcription machinery [BR:
hca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPPC18_00455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
AFI01890
LinkDB
All DBs
Position
complement(91212..93230)
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AA seq
672 aa
AA seq
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MKKKANEEKAPKRAKQEAKTEATQENKAKESNKENKNNKAKEGKIKEAKAKEPIPVKKLS
FNEALEELFANSLSDCVSYESIIQISTKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLN
AIDKIKKTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEI
ELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDSK
KDDDSEEDEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALEAPVDEKEDELVR
LLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTL
IANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEIL
EQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHE
KGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQETGKEPDLEV
VAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKA
QIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSP
QYGRILRNYLRI
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagcccccaaaagagctaaacaggaagccaaaaca
gaagccacacaggaaaataaagctaaagagagtaataaggaaaacaaaaacaataaagcc
aaagagggcaaaattaaagaagctaaagctaaagaacctatccctgttaaaaagcttagt
tttaatgaagcgttagaagaattgttcgctaattccttaagcgattgcgtttcttatgag
tccatcattcaaatcagcacgaaagtccccactctagcccaagtcaaaaaaatcaaagaa
ttgtgccagaaataccaaaagaaattagtcagctcttcagaatacgctaaaaaactcaat
gcgattgacaagattaaaaaaactgaagaaaagcaaaaagttttagatgaagaattagaa
gatggctatgactttttgaaagaaaaggattttttagagtggagcaggagcgatagcccg
gtgcgcatgtatttgcgtgaaatgggggatataaaacttttaagcaaagatgaagagatt
gaattgagcaagcagatccgcttgggcgaagacattattttagacgcgatttgctcggtg
ccgtatttgattgattttatctatgcgtataaagacgctttaatcaatcgtgaaagaagg
gttaaagagctttttaggagctttgatgatgacgatgaaaatagcgtgagcgattctaaa
aaagatgacgacagcgaagaagatgaagaaaacgaagaaaggaaaaaagtcgtttctgaa
aaagacaggaagcgtgtagaaaaggttcaagaaagctttaaagccctagataaggctaaa
aaagagtggctcaaagcccttgaagcccctgtagatgaaaaagaagatgaactagtgcgt
ttattgaccctagcttacaaacgccaaacgctcaaagacagactctatgatttagagcct
accagcaagctgattaatgaattagtcaaaacgatggaaaccactttaaaaagcggcgat
gggtttgaaaaagagttgaaacgcttggaatacaaactgcccttattcaatgacactctg
atcgctaaccataaaaaaatccttgccaatatcactaacatgactaaagaggatattatc
gctcaagtgccagaagcgactatggtgagcgtgtatatggatcttaaaaagctttttttg
actaaagaagcgagcgaagagggctttgatttagaccctaacaaactaaaagaaatttta
gagcaaatcaagagagggaaattgatttccgatcgcgctaaaaacaaaatggctaaatcc
aatttaaggttggtggtgagcatcgctaaacgattcacgagcagaggcttgccattcttg
gatttgattcaagagggcaatatcggcttgatgaaagcggtggataagtttgaacatgaa
aagggcttcaagttttctacctatgcgacctggtggatcaagcaagccatcagcagagcc
atagccgatcaagcccgcactatccgcatccccattcacatgattgacacgatcaatcgc
atcaataaggtcatgcgtaaacacattcaagaaaccggcaaagagcctgatttagaagtg
gtggctgaagaagtggggctttcgttagataaagtgaagaatgtgattaaggtgactaaa
gagcctatcagtttggaaaccccagtcggcaatgatgatgatggcaaatttggggatttc
gtggaagacaaaaacatcgtcagctctatcgatcacatcatgcgagaagatttaaaagcc
caaattgaaagcgttttggatcagttgaacgagcgagagaaagcggtgatccgcatgcgt
tttgggcttttagacgatgaaagcgatcggactttagaagaaatcggcaaggaattgaat
gttactagagaaagggtgcgccagattgaaagctctgcgatcaagaaattgagaagcccg
caatacgggcgcattttaagaaactatttgcgcatttga
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