Helicobacter pylori PeCan18: HPPC18_01715
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Entry
HPPC18_01715 CDS
T02036
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hca
Helicobacter pylori PeCan18
Pathway
hca03410
Base excision repair
hca03430
Mismatch repair
hca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPPC18_01715
03430 Mismatch repair
HPPC18_01715
03440 Homologous recombination
HPPC18_01715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hca03400
]
HPPC18_01715
DNA repair and recombination proteins [BR:
hca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPPC18_01715
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPPC18_01715
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPPC18_01715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Fe-S_biosyn
Motif
Other DBs
NCBI-ProteinID:
AFI02129
LinkDB
All DBs
Position
complement(347575..349125)
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLKAQIKERVASIAYNEKGFPSPFLFKDLKKAALKIIEAMRANTEILVVGDYDADGV
ISSTIMAKFFESLNYKHVRIAIPNRFIDGYGISKKFLEKHHAPLIITVDNGISAFEAARF
CKEKNYTLIITDHHCLHHDEVPDAYAVINPKQPDCDFIQKEVCGALVAFYLCYGIHQLLG
KEKSHSSELLCLAGVATIADMMPLTFFNRFLVSKALYFLQKESLGAMGFLRQREVFRKRS
LKASDISFGIAPLINSAGRMQDAKMALDFLSTNNFQDSHSLYERLKACNMKRKMIQQQVF
EEAFKHAMVGEKIIVAFKDDWHEGVLGIVASKLVEATQKPSLVFTFKEGVYKGSARSSSN
IDLIDALNGVSSLLLGYGGHRQACGLSVGKNNIISLFETLENFDFKILSFCEKEPPLTLA
LKDIDRELLEIIEAGEPYGQENPEPLFQAQNLEVIEEKIIKESHQILRFKDKECVKEAIY
FNADRFLKAGEKVSVLFSVELDECSNEPKMFVKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaaagctcaaatcaaagagcgagtggcttctatcgcttataatgaa
aaagggtttcctagcccctttttattcaaagacttgaaaaaagccgcgctcaaaatcata
gaagccatgcgcgcaaacacagagattttagtggtgggcgattatgacgctgacggcgtg
attagctctactatcatggcaaaattttttgaaagcctaaattataagcatgttcgcatt
gcaatccctaatcgcttcattgatggctatgggatttctaaaaaatttttagaaaaacac
cacgcccctttaatcatcacggtggataacgggattagcgcctttgaagccgcacgattt
tgcaaagaaaaaaattacacccttatcatcacagatcaccattgcttacaccatgatgaa
gtcccagacgcttatgcagtgatcaaccccaagcaaccggattgtgattttatccaaaag
gaagtgtgcggggcgttggtagcgttttatttgtgctatggcatccaccagcttttagga
aaagaaaaaagccattctagcgagttgttgtgcttagcgggcgtggcgactattgctgac
atgatgcctttgactttttttaaccgctttttagtttctaaagccttgtattttttgcaa
aaagaatccttaggggcaatggggtttttgcgccaaagagaagtttttagaaaacgctct
ttaaaagcgagcgatatttcttttggtatcgctcccttaatcaactccgcagggcgcatg
caagatgcgaaaatggctttagattttttaagcacgaataattttcaagatagccattct
ttgtatgaacgcttgaaagcatgcaatatgaagcgtaaaatgatccaacagcaggttttt
gaagaggcttttaagcatgcgatggttggcgaaaaaattatcgtcgcttttaaggatgat
tggcatgagggcgtgcttgggattgtggcttcaaaattagtggaagccactcaaaagcca
agcctggtttttacctttaaagaaggggtgtataaagggagcgctcgtagctcttcaaat
attgatctcattgacgctttgaatggggtttcttctttgttgctcggctatggggggcat
aggcaagcttgcggtttgagcgttggaaaaaacaatatcatctctctctttgaaacttta
gaaaattttgattttaaaatcctatctttttgtgaaaaagaaccccctttaacgctcgca
ttaaaagacattgacagagagcttttagagattatagaagcgggcgaaccttatgggcaa
gaaaaccctgagcctttattccaggcacaaaatttagaagtcatagaagaaaaaatcatt
aaagaaagccaccaaattctgcgttttaaggataaagaatgcgtcaaagaggctatttat
tttaacgctgatcggtttttgaaagcgggcgaaaaggtgagcgtgctttttagcgtggaa
ttagatgagtgttctaatgagcctaaaatgtttgttaaaagtttgttgtag
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