Halomonas sp. SS10-MC5: I4484_00040
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Entry
I4484_00040 CDS
T07024
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
hcam
Halomonas sp. SS10-MC5
Pathway
hcam00541
Biosynthesis of various nucleotide sugars
hcam01100
Metabolic pathways
hcam01250
Biosynthesis of nucleotide sugars
Module
hcam_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
I4484_00040 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hcam01005
]
I4484_00040 (rfaD)
Enzymes [BR:
hcam01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
I4484_00040 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
hcam01005
]
Core region
I4484_00040 (rfaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
ThiF
Motif
Other DBs
NCBI-ProteinID:
QPP49565
LinkDB
All DBs
Position
10285..11250
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AA seq
321 aa
AA seq
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MIVVTGGAGFIGSNLVKALNARGRDDVLVVDDLRDGTKFVNLADCTLGDYLDKDDFRGRV
EAALRGEPSRLPPIEAIFHEGACSDTTEWDGRFMLDNNFEYSKVLLHYCQQQGIPFLYAS
SAATYGGSQVFREEPEYEKPLNVYGYSKLLFDQYVRQHWDDFTSQVVGFRYFNVYGPREQ
HKGKMASVAYHHHTQVRAGQDLRLFDAWDGYEAGMQSRDFVYVGDVVDVNLWFLDNPGKS
GIFNLGTGRAEPFKAIGEAVIDFYGRGRIEYIDFPEELKGRYQSYTRADISHLREAGYAR
EFRTVAEGVKAYLAWLNGAQG
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtagtgacaggtggcgccggcttcatcggctcgaatctggtcaaggccctcaac
gcgcgcggacgggatgacgtgctggtcgtcgacgacctgcgcgacggtaccaagttcgtc
aacctggcggactgcaccctgggcgactatctcgacaaggacgacttccgtgggcgcgtc
gaggcggcgctgcgcggcgagccctcgcgcctgccgccgatcgaggcgatcttccacgaa
ggcgcctgctcggataccaccgagtgggacggccgcttcatgctcgacaacaacttcgag
tactccaaggtgctgctgcactactgccagcagcagggcattcccttcctctatgcttcc
tcggcggccacctacggcggcagccaggtgttccgcgaggagcccgagtacgagaagcca
ttgaatgtctacggctactccaagctgctgttcgaccagtacgtgcgtcagcactgggac
gacttcaccagccaggtggtggggttccgctacttcaacgtctacggcccgcgcgagcag
cacaagggcaagatggcgagtgtcgcctaccaccaccatacccaagtcagggcaggacag
gacctgcggctgttcgatgcctgggacggctatgaggccggcatgcagagccgcgacttc
gtctatgtcggcgacgtggtcgacgtcaacctgtggtttttggacaaccccggcaagtcg
ggcatcttcaacctcggcaccggccgcgccgagccgttcaaggccatcggcgaggcggtc
atcgatttctacggccgtggacgcatcgagtacatcgactttcccgaagagctcaagggg
cgctaccagagctatacccgggccgacatctcgcacctgcgggaggcgggctacgcccgc
gagttccgcaccgtggccgaaggggtaaaagcctatctcgcgtggctgaacggggcgcag
ggatga
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