Halomonas sp. SS10-MC5: I4484_02260
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Entry
I4484_02260 CDS
T07024
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hcam
Halomonas sp. SS10-MC5
Pathway
hcam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
I4484_02260 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcam03400
]
I4484_02260 (sbcB)
Enzymes [BR:
hcam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
I4484_02260 (sbcB)
DNA repair and recombination proteins [BR:
hcam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
I4484_02260 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I4484_02260 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I4484_02260 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
tRNA_bind_3
Motif
Other DBs
NCBI-ProteinID:
QPP49974
LinkDB
All DBs
Position
487036..488526
Genome browser
AA seq
496 aa
AA seq
DB search
MAKPNAAPMTFLWHDYETFGADPRRDRPSQFAAIRTDSDFNEIGEPVELFCKPADDYLPH
PQACLITGITPQQARRRGLPEAEFAGRIHALMSEPGTCALGYNSLRFDDEVSRCLFYRNL
LDPYSREWQNGNSRWDLIDAVRTFHALRPAGIEWPRREDGSPSFRLEDLTAANGIAHEGA
HDAVADVRATIALARLLRQRNARLFDHLLALRNKREVARRLDIPGRKPVLHVSRRYPASR
GCSALVLPLAEHPTNPNGVIVYDLSVDPQGMIELDAEQIRQRVFVSSDDLAEGEARIPLK
VIHINRSPVILPAAALKDVEGPRQGEYGEIVERLGFDLSACRANWKRLAASPEAAAKAAE
VFAQPPPDGPHDPDLMLYSGGFFSPADRQQMERVRATPPWDLVDARFAFQDLRLEEMLFR
YRARNYPDTLSGEEQARWEAYRWERMNDGAVAGFTLKDFAREIERLNQVALSDRDRLILE
ELVMHVEAMMPAQAFG
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcccaatgccgccccgatgaccttcctctggcacgactacgagaccttcggc
gccgatccccgtcgcgaccggccctcgcagttcgccgcgattcgcaccgacagcgacttc
aacgagatcggcgagccggtcgaactcttctgcaagccggcggacgactacctgccgcat
ccccaggcgtgcctgatcaccggcatcacgccgcagcaggcgcgccgccgcgggctgccc
gaggccgagttcgccgggcgtatccatgcgctgatgagcgagccgggcacctgcgcgctg
ggctacaacagcctgcgcttcgacgacgaggtgagccgctgcctgttctaccgcaacctg
ctcgatccctactcccgcgagtggcagaacggcaattcgcgctgggacctgatcgatgcg
gtacgcaccttccatgccctgcgcccggcgggcatcgagtggccgcgccgcgaggacggc
tcgcccagctttcgcctcgaggacctgaccgcggccaacggcatcgcccatgagggcgca
cacgatgccgtggccgacgtgcgtgccaccatcgcgctggcccggctgctcaggcagcgc
aatgcgcgcctgttcgatcacctgctggcgctgcgcaacaagcgcgaggtggccaggcgc
ctcgacatcccgggccgcaagccggtgctccacgtatcgcgccgctacccggccagccgg
ggctgcagcgcgctggtgttgccgctggccgagcatcccaccaaccccaatggggtgatc
gtctacgatctctcggtggacccccagggaatgatcgagctggatgccgagcagatccgc
cagcgggtcttcgtcagcagcgacgacctcgccgagggcgaggcgcggattccgctcaag
gtcatccacatcaaccgcagcccggtgatcctgcccgccgcggcgctcaaggacgtggag
gggccgcgccagggcgagtacggtgaaatcgtcgagcgcctggggttcgatctgtccgcc
tgccgggccaactggaagcgtctcgcggcgagccccgaggcggccgccaaggcggccgag
gtcttcgcccagccacctcccgacggcccccacgacccggacctgatgctctacagcggc
ggcttcttctcgccggccgatcgccagcagatggagcgtgtccgcgcgacgccgccgtgg
gatctggtggatgcccggtttgccttccaggacctccgcctggaggagatgctgttccgc
taccgggcgcgcaactaccccgacaccctcagcggcgaggagcaggcacgctgggaggcc
taccgctgggagcgcatgaacgacggcgccgtggccgggttcacgctcaaggacttcgcc
cgcgagatcgagcggctcaaccaggtcgccctgagcgatcgcgaccgcctgattctcgag
gagctggtcatgcatgtggaggcgatgatgccggcccaggctttcggctga
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