Halomonas sp. SS10-MC5: I4484_06035
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Entry
I4484_06035 CDS
T07024
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hcam
Halomonas sp. SS10-MC5
Pathway
hcam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I4484_06035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcam03019
]
I4484_06035
03009 Ribosome biogenesis [BR:
hcam03009
]
I4484_06035
Enzymes [BR:
hcam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I4484_06035
Messenger RNA biogenesis [BR:
hcam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I4484_06035
Ribosome biogenesis [BR:
hcam03009
]
Prokaryotic type
rRNA helicases
I4484_06035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
HEM4
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
QPP50652
LinkDB
All DBs
Position
1272608..1274311
Genome browser
AA seq
567 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLAAVETLGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLEMTRREPQVLVLAPTRELAQQVAVSFTKYGQNLQGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRVIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PQDAQRVFFSATLPAEIERIVNRYLVDPVKVAIESRTTTAESIEQRLVRVDGGAKLEALA
RILEVEPVDAAIVFVRTRAACTTLMEQLSARGVNVASLSGDLDQSLRERTIQRLKRGKID
VLIATDVAARGLDVPRITHVINYDLPQDSEAYTHRIGRTGRAGREGVAITFAGFREGRKI
GWLEQATGQRMTEMALPDEAAIRAHRDEVFHQRVIGMLTAGADEQRALVERLVAEGHDPV
ELACAFAALARADEAPIGRLQAPRKERTERAPRDGKPPRRERGPSEGMTRYRVAVGHKDG
VKPGQLVGALANEGGIEGSRIGRIDIRNAFSVVELPSSLPPSILAKMARARVAGRPLEIS
EDGGAPERAPRRRREDGDAPVRRRTSA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcctcgccgagcttcggcgatcttgcgctgctgcctgccgtt
cttgccgctgtagaaacactgggttacgaaattccttcaccgattcaggcgcagaccatt
ccggcgttgctggaagggcgtgacatgctgggccaggcccagaccggcaccggcaagacc
gcggcctttgccctgccgctgctgtcgcgtctcgagatgacccggcgcgagcctcaggtg
ctggtgctggcgccgacccgtgagctggcccagcaggtggccgtttcctttaccaagtac
ggccagaacctgcaggggctggaagtggccaccctgtgcggtggccaggaatatcgtgaa
cagctgggtgcgctcaagcgtggcgcccaggtggtggtgggcacgccgggccgggtgatc
gaccacctcgaccgcggcagcctcaagctcgatggcctctctgcgctggtgctggacgaa
gccgacgagatgctgcgcatgggcttcatcgacgacgtcaagcgcgtggtcgccgacacc
ccgcaggacgcccagcgggtgttcttctccgccaccctgccggccgagatcgagcgtatc
gtcaaccgctatctggtcgatccggtcaaggtggcgatcgaatcgcgcaccaccaccgcc
gagagcatcgaacagcgcctggtgcgggtcgacggcggcgccaagctggaggcgctggcg
cgcatcctcgaggtcgagccggtggacgccgcgatcgtcttcgtgcgtacccgggctgcc
tgtaccacgctgatggagcaactctccgcccgcggcgtgaacgtggccagcctctccggc
gacctggaccagagcctgcgcgagcgcaccatccagcgcctcaagcgcggcaagatcgac
gtgctgatcgccaccgacgtggccgcccgtggcctcgacgtgccgcgcatcacccacgtg
atcaactacgacctgccccaggacagtgaggcctatacccaccgtatcggtcgtaccggc
cgtgccggtcgcgaaggtgtggcgatcaccttcgccggcttccgcgaaggccgcaagatc
ggctggctggagcaggccaccggtcagcgcatgaccgagatggcgctgcccgacgaggcc
gccatccgcgctcatcgcgacgaagtgttccatcagcgcgtcatcggcatgctgaccgct
ggggccgacgagcagcgtgctctggtcgagcggctggtggcggaaggccatgacccggtc
gagctggcctgtgccttcgccgccctggcgcgtgccgacgaggcgcccatcggccgcctg
caggcgccgcgcaaggagcgcaccgagcgcgccccgcgcgatggcaagccgccgcgtcgc
gagcgtggcccgagcgagggcatgacccgctaccgcgttgccgtcggtcacaaggacggc
gtcaagccgggtcaactggtcggcgctctggccaacgagggcggcatcgagggttcgcgg
atcggccgtatcgatatccgcaacgccttctcggtggtggagctgcccagctcgctgccg
ccgagcatcctggccaagatggcccgcgcccgcgtcgccggccgcccgctggagatcagc
gaggatggcggtgcccccgagcgcgccccgcgtcgtcgtcgcgaagacggtgatgcaccg
gtgcgtcgccgcaccagcgcctga
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