Halomonas sp. SS10-MC5: I4484_07965
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Entry
I4484_07965 CDS
T07024
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hcam
Halomonas sp. SS10-MC5
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcam03019
]
I4484_07965 (hrpA)
Enzymes [BR:
hcam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I4484_07965 (hrpA)
Messenger RNA biogenesis [BR:
hcam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I4484_07965 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
AAA_25
T2SSE
NACHT
FtsK_SpoIIIE
PhoH
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
QPP51002
UniProt:
A0A7T2DDR6
LinkDB
All DBs
Position
1682062..1686090
Genome browser
AA seq
1342 aa
AA seq
DB search
MSTATPAGHTDDKIELQRLEQALGEVMLRDREPLSRRLNGLARRLREGKPVDRGLAEVAR
DVERSAALAASRRARPVALNYPPELPVAERRDEILAALRKHQVVVVAGETGSGKTTQLPK
LCLELGLGRRGLIGHTQPRRLAARSVATRLAEELEVPLGEQVGYQVRFTDQTGDATLVKL
MTDGILLAETRHDPDLSRYEAIVIDEAHERSLNIDFLLGYLKRLLPRRPELKLIITSATI
DVARFAEHFALPGADGEPRPAPVVEVSGRTYPVEVRYRPLVREEEDEADRTLQEGILHAV
AEIEQTERDRRWFHGPRDILVFLPGEREIRETADTLRRADLKATEILPLYARLSNAEQNR
VFAPHAGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPVEPVSQASAD
QRKGRCGRVAEGVCIRLYDEEDFLSRPEFTDPEIRRTNLASVILSMLSLKLGDIEQFPFV
DPPDSRFIKDGFRLLFELGAVDEANRLTPVGRKLARLPIDPRLARMVLAGAEQGGLRDVL
VVVSALAVQEPRDRPAEKRQAADQAHRRWHDPDSDFVALLNLWQGFEAARDELSGNQLRR
WCKEHYLNYLRLREWHDTFRQLRQLLREMGIEVPPPAPLPEPAQDGEEHDRARQQARRQS
AVQLHKALLPGLLSHLGMLTENREYLGARNRKFVIHPGSGLAKKPPKWLMAFELVETTRL
FARTVARIEPQWVEPAAGHLVKRSYSEPHWEMKRAQVVAKEQVTLFGLPIVSGRSVHYGP
IAPREARELFIRRALVEGDFRTRGEFFDYNRALVEEVEELEDRARKRDILVDEETLFAFY
DERIPADIVNGRGFEAWRRKAEADDPDILKFDRAVLLAREAKEVTQAQYPDELLLGGVRY
PLDYRFEPGAPDDGVTLTVPAAMLPQLPRARLEWLVPGLLREKCIALLKSLPKAIRRQVV
PIPDWVDAALETLTPDDVPLTEALGEFLRRRTGVRVHPDDWRTDQLEPHLIMNVRVVDHE
GRPLGQGRDVRELERRFEAAAGEGARALAAEVSEAPDVTGLPESPLPQSRVTTQAGIRVE
AYPALVPEGEAFRVELFDHPGKAEQAHRRGVARLAMARLPDQVRSIQRLKELEACALLFT
KVGSKRELVDDVVEAVFARTVAASPLPRSAAELEARLEATRAELVPGAEALVATLKRSLE
GHLAVTKALKGNLNLALALVYSDLKAQMQRLVHPGFVNEAGEWLEEYPRYMEAALIRLEK
APRERMRDQMHMQEVQDFEARLAARRESQRRGGHEDPELVEFGWWIEELRVSLFAQQLGT
RMPVSVKRLERRWMELVGQGQG
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccgctacccccgctggacataccgatgacaagatcgagctgcagcgcctcgag
caggcgctgggcgaggtcatgttgcgcgatcgcgagcccctttcgcgcaggctgaacggc
ctggcgcggcgcctgcgcgagggcaagccggttgaccgcggcctggccgaggtggcgcgc
gacgtcgagcgttccgcggcgctggcggccagccgccgggcccggccggtggcgctgaac
tatcctcccgagctgccggtggcagagcgccgcgacgagatcctcgccgctctgcgcaag
caccaggtggtggtggtggccggcgagaccggctccggcaagaccacccagctgcccaag
ctgtgcctggagctgggcctcgggcggcgcggcctgatcggccacacccagccgcggcgg
ctggcggcgcgctcggtggccacgcgcctggccgaggagctcgaggtgccgctgggcgag
caggtgggctaccaggtgcgcttcaccgaccagaccggcgacgctaccctggtcaagctg
atgaccgacggcatcctgctggccgagacccgccacgacccggatctcagtcgctacgaa
gcgatcgtcatcgacgaggcccacgagcgcagcctcaacatcgacttcctgctcggctac
ctcaagcgcctgctgccgcgccggcccgagctcaagctgatcatcacctcggcgaccatc
gacgtggcgcgcttcgccgagcatttcgcgctgcccggcgccgacggcgaacccaggccc
gccccggtggtagaggtctcgggccgcacctacccggtcgaggtgcgctatcgtccgctg
gtgcgcgaggaagaggatgaggccgaccgcaccctgcaggagggcatcctccacgccgtg
gcggagatcgagcagaccgagcgcgacaggcgctggttccacggcccccgcgacatcctg
gtgttcctgcccggcgagcgcgagatccgcgagaccgcggacaccctgcggcgtgccgac
ctcaaggccaccgagatcctgccgctctatgcgcggctctccaacgccgagcagaaccgc
gtcttcgccccgcatgccgggcgtcgcatcgtgctggccaccaacgtcgccgagacctcg
ctcaccgtgcccggcattcgctacgtgatcgaccctggactggtgcgcatcagccgttac
agctaccgcgccaagatccagcgcctgccggtggagccggtcagccaggccagcgccgac
cagcgcaagggtcgctgcgggcgggtggccgagggggtgtgcatccgcctctacgacgag
gaggatttcctctcacgccccgaattcaccgaccccgagatccgacgcaccaacctggcg
tcggtgatcctgtcgatgctttccctcaagcttggcgacatcgagcagttccccttcgtc
gatccccccgactcgcgcttcatcaaggatggcttccgcctgctgttcgagctgggcgcg
gtggacgaggccaaccgcctgacgccggtaggacgcaagctcgcccggctgccgatcgat
ccgcgcctggcgcgcatggtgctggcgggcgccgagcagggcgggctgcgcgacgtgctg
gtggtggtctcggcgctggcggtgcaggagccgcgcgaccgcccggcggagaagcgccag
gccgccgaccaggcccatcgtcgctggcacgatccggactccgacttcgtcgcgctgctc
aacctgtggcagggcttcgaggctgcccgcgacgagctcagcggcaaccagctgcggcga
tggtgcaaggagcactacctcaactacctgcgcctgcgcgagtggcacgatacctttcgc
cagctgcgccagctgctgcgcgaaatggggatcgaggtgccgccgccggcaccgttgccc
gagccagcgcaggacggggaagaacatgaccgggcccgccaacaggcgcgccgccagagt
gccgtgcaattgcacaaggcgctgctgccgggcctgctctcgcatctgggcatgctcacc
gagaaccgagagtacctgggggcgcgcaaccgcaagttcgtcatccatcccggctcgggg
ctggccaagaaaccacccaagtggctgatggccttcgagctggtggagaccacccggctg
ttcgcccggaccgtggccaggatcgagccgcagtgggtcgagcccgcggccgggcacctg
gtcaagcgcagctacagcgagccgcactgggagatgaagcgtgcccaggtggtggccaag
gagcaggtcacgctgttcggcctgcccatcgtcagcgggcgcagcgtgcactacggcccc
atcgccccgcgggaggcacgcgagctgttcatccgccgcgccctggtggagggcgatttt
cgcacccggggcgagttcttcgactacaatcgcgccctggtggaagaggtcgaagagctc
gaggaccgggcgcgcaagcgcgacatcctggtcgacgaggagacgctgttcgccttctac
gatgagcggattcccgccgacatcgtcaacggcaggggcttcgaggcatggcgcaggaag
gccgaagccgacgatcccgatatcctcaagttcgaccgcgccgtgctgctggcgcgtgaa
gcgaaggaggtcacccaggcccaataccccgacgagctgttgctcggcggagtgcgctat
ccgctcgactatcgcttcgagcccggcgcgccggacgacggcgtgaccctgacggtgccg
gcggcgatgctgccgcagctgccgcgggcacggctcgagtggttggtgccggggctgctg
cgtgaaaagtgcatcgccctgctcaagtcgttgccgaaggcgattcggcgccaggtggtg
ccgattcccgactgggtcgacgccgcgttggaaacgctgacgcccgacgacgtaccgctc
accgaggccctgggcgagttcctgcgtcgccgcaccggcgtgagggttcaccccgacgac
tggcgcaccgatcagctcgagccgcacctgatcatgaacgtccgcgtggtcgaccacgag
ggccggccgctgggccagggacgcgacgtgcgcgagctcgagcgccgcttcgaggcggcg
gcgggcgagggcgcccgagcgctggccgccgaggtcagcgaggcgcccgacgtcaccggc
ctgcccgaatcgccattgccccagtcgcgggtgacgacccaggcaggcatccgggtcgag
gcgtatccggcattggtgcccgagggcgaggccttccgtgtcgagctgttcgaccacccc
ggcaaggccgagcaagcgcaccgccgtggcgtggctcggctggccatggcccgcctgccg
gaccaggtgcgcagcatccagcggctgaaggagctcgaggcgtgtgccctgctgttcacc
aaggtgggcagcaagcgcgaactggtcgacgatgtggttgaggcggtattcgcccgcacc
gtggcggcgtcgccgctgccgcgctcggccgccgagctcgaggcgcgactcgaggcgacc
cgtgccgagctggtgccgggcgccgaggcgctcgtcgccacgctcaagcgctcgctcgaa
ggccatctggccgtgaccaaggcactaaagggcaacctcaacctggcactggccctggta
tacagtgatctcaaggcccagatgcagcggctggtacatcccggcttcgtgaacgaggcg
ggggagtggctggaggagtacccgcgctacatggaggcggcactgatccggctggagaag
gcgccgcgcgagcgcatgcgcgaccagatgcacatgcaggaagtccaggatttcgaggcg
cgcctggccgcacggcgcgagagccagcgccgcggtggtcacgaggatcccgagctggtg
gagttcggctggtggatcgaggagctgcgggtgtcgctgttcgcccagcagctcgggacc
cgcatgccggtatcggtcaagcgcctcgagcggcgctggatggagctggtggggcagggt
caaggctga
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integrated database retrieval system
