Halomonas sp. SS10-MC5: I4484_08395
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Entry
I4484_08395 CDS
T07024
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hcam
Halomonas sp. SS10-MC5
Pathway
hcam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I4484_08395 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcam03019
]
I4484_08395 (rhlB)
Enzymes [BR:
hcam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I4484_08395 (rhlB)
Messenger RNA biogenesis [BR:
hcam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I4484_08395 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Utp25_C
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QPP51083
LinkDB
All DBs
Position
1775154..1776428
Genome browser
AA seq
424 aa
AA seq
DB search
MSESEQTTAPAENRKPKRRRRKPRRRQSNWDLRQFQVPAVAGKWRFHDFDLPLPLMRAIH
ALGFEYCTPIQAEALTHTLLGGDVVGKAQTGTGKTAAFLISILAYFLEEEVPDGQKPGAP
RALIVAPTRELALQIEKDAKALARFTELNVASVVGGMDYQKQREHLGKKLDILVATPGRL
LDFHEKRDVDLTQVEILVLDEADRMLSMGFIPDVKRIIRHTPKKEERQTFLFSATFSQDI
LNLASQWTHQPAHVEIEVTVDNKANIDQRVYMVSDDDKPKLLINLLKQESFDRVMVFGNR
RDLVRKLEGLLKKADVNVAMLSGDVPQNQRIKTLERFREGEVQVLVATDVAGRGIHIEDV
SHVINYTLPEDPEDYVHRIGRTGRAGATGVSISFVGEEDAFSLPEIERYIQDKLPCEHPP
EGLL
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtcggaacagaccacagccccggccgagaaccgcaagcccaagcgtcgtcgt
cgcaagccgcgccgccgccagtcgaactgggatctgcgccagtttcaggtgcctgccgtg
gcgggcaagtggcgctttcacgacttcgatctgcccctgccgctgatgcgtgccattcat
gcgctgggtttcgagtactgcacgccgatccaggccgaggcgctgacccacaccctgctg
ggtggtgacgtggtcggcaaggcccagaccggcaccggcaagaccgccgccttcctgatc
tcgatcctggcctacttcctcgaggaggaggtgccggacgggcagaagcccggtgccccg
cgcgcgctgatcgtcgccccgacccgagagctggcgctgcagatcgagaaggacgccaag
gccctggcgcgcttcaccgagctcaatgtggccagcgtcgtcggtggcatggactaccag
aagcagcgcgaacacctgggcaagaagctcgacattctggtggccacgcccgggcgcctg
ctcgacttccacgagaagcgcgacgtcgacctgacccaggtcgagatcctggtgctcgac
gaggccgatcgcatgctgtcgatgggcttcatccccgacgtcaagcgcatcattcgccat
accccgaagaaggaggagcgccagaccttcctgttctcggccaccttttcccaggacatc
ctcaacctggccagccagtggacgcatcagccggcccacgtcgagatcgaggtcacggtc
gacaacaaggccaacatcgatcagcgcgtctacatggtcagcgatgacgacaagccgaag
ctgctgatcaacctgctcaagcaggagagcttcgaccgggtgatggtgttcggcaaccgc
cgcgacctggtgcgcaagctcgaaggtctgctcaagaaggccgacgtcaacgtggcgatg
ctctccggcgacgtgccgcagaatcagcgcatcaagaccctggagcgtttccgcgagggt
gaggtgcaggtgctggtggccaccgacgtggccggccgtggcatccatatcgaggatgtc
agccacgtgatcaactacaccctgcccgaggatccggaggactacgttcaccgtatcggc
cgtaccggccgtgccggggccaccggggtgtcgatcagcttcgtcggcgaggaggacgcc
ttctcgctgcccgagatcgagcgctatatccaggacaagctgccctgcgagcatccgccc
gaggggctgctttaa
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