KEGG   Halomonas sp. SS10-MC5: I4484_09815
Entry
I4484_09815       CDS       T07024                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
hcam  Halomonas sp. SS10-MC5
Pathway
hcam03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hcam00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I4484_09815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hcam03019]
    I4484_09815
Messenger RNA biogenesis [BR:hcam03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     I4484_09815
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: QPP51586
LinkDB
Position
complement(2072220..2073803)
AA seq 527 aa
MNLGLYGHENDWIAVDCGMMIRQDLPDSPLQVPSLETPEALDIRPSALIITHGHEDHIGA
AAWLWPKWQCPVYATPLAAGLLRAKFHERGLAVDAIRVIEPGEALENGPFTLRYLPLTHS
IPESCALLIAVGDYRVLHTGDWKLDPEPLIGPPVKGALFRALAPVDLVVGDSTNAPMPGH
SRSEGEVARALEHRLAQCTGRVVVSCFASNLARVLAVARAAERCGRRVSLMGRAMERMVA
VARGLGYLDDMPALVPTSDLGYLPPTEVLVIATGSQGEPRAALSRLANGRHPSFELMAGD
TVLFSAKAIPGNERQIERLKHALSHLDVAVWDEFNHPELHASGHPAQDELRTLYGWIKPR
HLLPVHGERRHQQAHQEVAEAMGIQAPLAPVNGDLIRLDGEGLTLESRHPQRPCIVSQNA
VTPLPGLTAEHGSPRHGILHLALSVASTRTGWTRIGRLMMDAHRVSAMDEESFTEWLDER
LEEVEAETLAELRTALQPLITSWLGQHLRQLPDVHLQLIPVEVPAYR
NT seq 1584 nt   +upstreamnt  +downstreamnt
atgaacctggggctctacgggcatgagaacgactggattgccgtcgattgcggcatgatg
attcgccaggatttgccggattccccgctacaggtacccagtctcgagacgcccgaggcg
ctggacatccgcccctcggcgctgatcatcacgcatggacacgaagatcatatcggcgct
gccgcctggctgtggcccaagtggcaatgtcccgtatacgccactccgctggcggccggc
ctgctgcgggccaagtttcacgagcgcggcctcgccgtcgacgccatccgtgtgatcgag
cctggcgaagccctggagaacggccccttcaccctgcgctacctgccgctgacgcactcc
atccccgagagctgcgccctgctgatcgccgtcggcgattaccgcgtgctgcataccggc
gactggaagctcgacccggagccgttgatcggcccaccggtcaagggtgcactgtttcgt
gccctggcgccggtggacctggtggtcggcgactccaccaacgcccccatgccggggcac
tcgcgcagcgaaggcgaagtggccagggcgctcgaacaccgcctcgcccagtgcacgggg
cgcgtcgtggtgagctgcttcgccagcaacctggcccgcgtgctggccgtggcccgagcc
gccgagcgctgcgggcgccgggtcagcctgatgggtcgggccatggagcgcatggtggcg
gtagcccgaggcctcggctacctggacgacatgccggcgctggtaccgaccagcgatctt
ggctatctccctccgacggaagtcctggtcatcgccaccggcagccagggcgagccacgc
gccgccctcagccggctggccaacggccggcatcccagtttcgaactgatggcaggcgat
accgttctcttctcggccaaggcgattcccggcaacgagcgccagatcgagcgcctgaag
catgccctgagtcatctcgacgtggcggtgtgggacgaattcaaccaccccgaacttcac
gcctcaggccatcccgcccaggacgaattgcgcaccctctatggttggataaagccacgt
catctactgccggtacatggcgagcgtcgtcaccagcaggcgcaccaggaggtggcggaa
gcgatgggaatacaggcccccctggcgccggtcaatggcgacttgattcgcctcgatggc
gaggggctgacgctggaatcgagacaccctcagcgaccctgcatcgtcagccagaatgcc
gttacgccccttccggggcttaccgccgagcatggttcgccgcgccacggcatcctgcac
ctcgccctgtcggtcgcctcgacgagaaccggatggacacgtatcggacgcctgatgatg
gacgcgcatcgagtcagcgccatggacgaagagagcttcaccgaatggctggacgagcgc
ctggaagaagtcgaggcggaaaccttggccgaactccgtaccgccctgcagcctctcatt
acctcctggctgggacagcaccttcgccaattaccggacgttcacctccagctgatcccc
gtggaggtaccggcctaccgctga

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