Halomonas sp. SS10-MC5: I4484_12165
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Entry
I4484_12165 CDS
T07024
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hcam
Halomonas sp. SS10-MC5
Pathway
hcam03030
DNA replication
hcam03430
Mismatch repair
hcam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I4484_12165
03430 Mismatch repair
I4484_12165
03440 Homologous recombination
I4484_12165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcam03032
]
I4484_12165
03400 DNA repair and recombination proteins [BR:
hcam03400
]
I4484_12165
Enzymes [BR:
hcam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
I4484_12165
DNA replication proteins [BR:
hcam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
I4484_12165
DNA repair and recombination proteins [BR:
hcam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
I4484_12165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
PAS_4
PAS
Rv2179c-like
PAS_8
Motif
Other DBs
NCBI-ProteinID:
QPP48011
LinkDB
All DBs
Position
2606130..2608193
Genome browser
AA seq
687 aa
AA seq
DB search
MKGGKLPKRQRLIGLWLLLSGISLLGGAIFAAWLDSLFQPQGVARLMLWLGCFSGGGTIF
LLGLLLERMLFTPLRHLQVQLARLVANPDAREDYPPEGWLRGLGPDLVRVREAWRSDRQR
LATAHAEGARSAARIRQELETLLQVLDMPLLLCDHHRRLLLFNQAAEKLFEKHTGLGLGK
RLDALLPISSLQDALSQLPQDGSPRELLIPCDERWLHTVMRRVPQSNGETLLTLTDATAA
WTSEMGARAGLAQHMAPLRRHGASLASAAEALGSVRHARHIDDTLRRRLEAVIDEESRAL
GSEIENLGRLIEDMQQQGERLVPLWSNDLWQSLNERLGDSPIEVLPIGMPAWFKGDAPAL
LVLLVTLLVRLSKHADTTYFEGEILLGNRRVYLDLIWPGKPLPQRELAAWCEQRLDALPL
SPRVGDLLRQHASDAWSLADSDGRHARLRLPLPAMDRVGAPPSQLPPRPEFHDFGIADLP
PPDAELARRPLKALEIVAFDTETTGLELRRGDTVISIGACRIVNGRLLASDTFDVRVDPG
RPIPPASTAIHGITDSEVAGAPPLPVILPRFRDYIGDAVILAHNAAFDLLALQPTDSGTT
LDMPVLDTLLLSRALDESLDGHDLDTLAERYDLSFPPGTRHTAIGDARVTAELWLALLPR
LEARGIETLEQALALQATALDREDACT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaggcaagctgcccaagcgccagcgcctgatcggcttgtggctgttgctcagc
ggcatcagcctgctgggtggcgccatcttcgccgcctggctcgacagcctgttccagccc
cagggggtcgcccgcctgatgctgtggctcggctgcttctccgggggcggaaccatcttc
ctgctcggcctgctgctagagcgcatgctgttcaccccgctgcgccatctgcaggtgcaa
ctggcccgcctggtggccaaccccgatgcccgcgaggactatccacccgagggctggctg
cgcggcctgggtccggacctggtgcgagtacgggaggcctggcgcagcgaccgccagcgc
ctggctaccgcccatgccgagggtgcacgcagtgcggcacgcattcgccaggagctcgag
acgctgctgcaggttctcgacatgccactgctgctgtgcgatcaccatcggcggctgctg
ctgttcaaccaggccgccgagaagctgttcgagaagcataccgggcttgggctcggcaaa
cgcctggatgccctgctgccgatatcgagcctgcaggatgcactgagccagctgccgcag
gacggctccccgcgcgagctgctgattccctgcgacgagcgctggctgcacaccgtgatg
cgccgggtgccgcagagcaatggcgagaccctgctgaccctgaccgatgccaccgccgcc
tggaccagcgagatgggggcgcgtgccggcctggcgcagcacatggcgccgctgcgccgg
catggcgccagcctggccagcgccgccgaagcgctgggtagcgtacgccacgccaggcac
atcgacgacacgctgcgccggcgcctggaggcagtgatcgacgaggagagtcgcgccctg
ggcagcgagatcgagaatctcggtcgcctgatcgaggacatgcagcagcagggcgagcgc
ctggtgccactgtggtccaacgacctgtggcaatcgcttaacgaacggctcggcgacagc
cccatcgaggtcctgcccatcggcatgcccgcctggttcaagggcgatgccccggcgctg
ctggtcctgctcgtgacgctgctggtgcgattgagcaagcatgccgacaccacgtacttc
gaaggcgagatcctgctcggtaaccgccgcgtctacctcgacttgatctggcccggcaag
ccactgccgcagcgggaactcgcggcctggtgcgagcagcgactcgacgccttgccgctc
tctccgcgggtcggcgacctgctgcgtcaacatgccagcgacgcctggagcctggccgac
agcgatggacggcacgctcgcctgcgcctgccgttgcccgccatggatcgcgtcggggcg
ccgcccagccagctgccgccacggcccgagttccatgacttcggcatcgccgacttgccg
ccaccggatgccgagctggcccgacgcccactgaaggcgctggagatcgtggccttcgac
accgagaccaccgggctcgagctgcgccgcggcgataccgtcatcagcatcggcgcctgc
cgcatcgtcaacggccggcttttggccagcgacaccttcgacgtacgggtcgaccccggc
aggccgataccgccggccagcaccgcgattcatggcatcaccgacagcgaggtggccggc
gccccgccgctgccggtcatcctgccgcgcttccgcgactacatcggcgatgccgtgatc
ctggcccacaacgccgccttcgacctgctggccctgcagcccaccgacagcggcacgacc
ctggacatgccggtactcgatacgctgctgctctcccgagctctcgacgagagcctggac
gggcacgacctggataccctcgccgagcgctacgatctcagcttccccccgggcacccgt
catacggcgatcggggatgcgcgggtcaccgcggagctgtggctggcactgctgccgcgc
ctcgaggcccgcggcatcgagaccctggagcaggcactggcgctgcaggccaccgccttg
gaccgagaggacgcctgcacatga
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