Halomonas sp. SS10-MC5: I4484_13105
Help
Entry
I4484_13105 CDS
T07024
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hcam
Halomonas sp. SS10-MC5
Pathway
hcam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I4484_13105 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcam03400
]
I4484_13105 (mfd)
Enzymes [BR:
hcam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I4484_13105 (mfd)
DNA repair and recombination proteins [BR:
hcam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I4484_13105 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_22
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QPP48182
UniProt:
A0A7T2DB17
LinkDB
All DBs
Position
2813574..2817023
Genome browser
AA seq
1149 aa
AA seq
DB search
MPKLSPLDPPRPAGTRDTLYWQTPPGSAAALALAHLAGDAPLLVVTPDTASAQRLENDLR
FYASVPVLPFPDWETLPYDSFSPHQDIVSERLRTLRRLQDGEHGIVLVPINTLMQRLPPV
DYIAGRVLTLEVGMRLDREGFRESLSRAGYRAVETVYEPGEYALRGALIDLYPMGSESPL
RIDLFDDEIDTLRRFDPDTQRSQDKVERMELLPAHEYSLSRSAIACFREGFETLFDVDPR
QCPLYVDALKGIPSPGLEQYLPLFFEETATLFDHLADGTRVALLPDVFAAAEHHWAAIES
RYENLGVDPTRPLLPPHRAFLPVAEVFAAIKRHPRVELTEDPEHRHAHAVAARALPEATI
NARAKQPLAALRRFVDEHAGTRVLFVAESRGRREALEELLAPLHLELPHVEGFDAFRQGD
SRLAITEGEVGAGLWLEQPDIAVITETELFGDVVRQSRRREKATDMGELAIRHLAELRPG
APVVHQTHGVGRYRGLERLEAGGQAAEFVALEYADGARLYVPVDNLHLISRYAGADDELA
PLHRLGSEQWDKARRKAAEKIRDTAAELLDVYARREAREGFACAPPDEEYARFAASFPFE
ETPDQRAAISAVIGDMTAPRPMDRVVCGDVGFGKTEVAMRAAFLAVHSGRQVVVLVPTTL
LARQHFENFRDRFADTAVQIELVSRFTAGKGQADSLKRIESGQADIVIGTHKLLSKSMKL
PNMGLLIIDEEHRFGVTQKERLKELRAEVDILTMTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQRDESIIKEAILREILRGGQVYYLHNEVRTIETAAESLRALVPEARVAV
AHGQLPERSLERVMSDFYHKRYNVLVCSTIIETGIDVPSANTIVIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLAPPPRAMTKDAVKRLEAIGAAEDLGAGFTLASHDMEIRGAGELLG
EEQSGQMEAIGYTLYMEMLDRAVAAIRAGKTPNIEAPLSDGVEISLNLPALIPDDYLPDV
QQRLVMYKRIASAADEAELKELQVEMIDRFGLLPAAVKTLMRQTRLRQRAERLGIVRLEA
GAQRGRVIFGGQTRVDPLTLVKMIQAEPQRYRLDGADTLRFKGEMEDAEARFQAIEQLLD
GLNRKAKAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaactctcgccgctcgatccgccccgaccagcggggactcgcgataccctctac
tggcagaccccgccgggcagcgcggctgccctggcgctggcccacctcgccggcgacgcg
ccgctgctggtcgtcacgccggacaccgccagcgcgcagcggctggagaacgacctgcgc
ttctatgccagtgtgccggtactcccctttcccgactgggaaaccctgccctacgacagc
ttctcgccgcaccaggacatcgtctcggaacggctgcgaaccctgcgccggctccaggac
ggcgagcacggcatcgtgctggtaccgatcaataccctgatgcagcggctgccaccggtc
gactacatcgccgggcgcgtgctcaccctcgaggtgggcatgcggctggatcgcgagggc
tttcgcgagagtctctcgcgcgccggctaccgcgccgtggaaacggtctacgagccgggt
gagtacgcgctgcgtggcgccctgatcgacctctatcccatgggcagcgagagcccgctg
cgcatcgacctgttcgacgacgagatcgacaccctgcggcgcttcgaccccgatacccag
cgcagccaggacaaggtcgagcgcatggagctgctgccggcccacgagtactcgctgtca
cgcagcgccatcgcctgtttccgcgagggcttcgagaccctgttcgacgtcgacccgcgc
caatgcccgctgtacgtcgatgccctgaagggcattccctctcccggcctggaacagtac
ctgccgctgttcttcgaggagacggccacgctgttcgatcaccttgccgacggtacccgc
gtggcgctgctgcccgacgtcttcgccgccgccgaacaccattgggcggccatcgagagc
cgctacgagaatctcggcgtcgaccccacccggccgctgctgccgccccaccgcgccttc
cttcccgtcgccgaggtattcgccgccatcaagcgtcacccgcgagtggaactgaccgag
gaccccgagcatcgccacgcccatgccgtggccgcacgcgcgctgccggaggcgaccatc
aatgcccgcgccaagcagcctctggcggcgctgagacgattcgtcgacgagcacgctggc
acgcgggtgctgttcgtcgccgaatcgcgcggccgacgcgaggcactggaggagctgctg
gccccgctgcacctcgagctgccccatgtcgagggattcgacgccttccgccagggcgac
tcgcgcctggccatcaccgagggcgaggtcggcgccgggctatggctggagcagcccgac
atcgccgtgatcaccgagaccgagctgttcggtgacgtggtgcgccagagccgtcgccgc
gagaaggccaccgacatgggcgaactggccattcgccacctggccgagctgcgcccgggc
gccccggtggtgcaccagacccacggcgtcggccgctaccgcggcctcgaacgcctggag
gccggcggccaggctgcggagttcgtcgcactcgagtacgccgacggtgccagactctac
gttccggtggacaacctgcacctgatctcgcgctacgccggtgccgacgacgagctggcc
cccctgcatcgcctgggctccgagcagtgggacaaggcgcgccgcaaggcggccgagaag
attcgcgacaccgccgccgaattgctcgacgtctatgcccgccgcgaggcgcgggaaggc
ttcgcctgcgccccgcccgacgaggagtatgcccgcttcgccgccagcttcccgttcgag
gagacgcccgaccagcgcgccgccatcagcgcggtgatcggcgacatgaccgctccccgg
cccatggaccgcgtggtgtgcggcgacgtcggcttcggcaagaccgaggtcgccatgcgc
gccgccttcctcgccgtgcattcggggcgtcaagtggtggtactcgtgcccaccaccctg
ctcgccagacagcacttcgagaacttccgcgaccgcttcgccgacaccgcggtgcagatc
gagctggtgtcgcgctttaccgcgggcaaggggcaggccgattcgctcaagcgcatcgag
agcggccaggccgacatcgtcatcggcacccacaagctgctgtcgaagtcgatgaagctg
cccaacatggggctgctgatcatcgacgaggagcatcgcttcggcgtgacgcagaaggag
cgcctcaaggaactacgcgccgaggtcgacatcctcaccatgaccgccacgccgatcccg
cgcacgctcaacatggcgatgagcggcattcgcgacctgtcgatcatcgccacgcccccg
gcgcgccggctatcggtgaagaccttcgtccagcagcgcgacgagtcgatcatcaaggag
gcgatcctgcgcgaaatcctgcgcggcggccaggtctactacctgcacaacgaggtcagg
accatcgagaccgccgccgagagtctccgcgccctggtacccgaggcacgcgtcgccgtg
gcccacggccagctccccgaacgctccctggagcgggtgatgtcggacttctaccacaag
cgctacaacgtgctggtctgctccaccatcatcgagaccggcatcgacgtgcccagcgcc
aacactattgtcatcgagcgcgccgacaagttcggcctggcccagttgcaccagctgcgc
ggtcgcgtgggcaggagccaccaccaggcctatgcctacctgctcgccccgccgccgcgg
gcgatgaccaaggatgccgtcaagcgcctggaggcgatcggcgccgccgaggacctcggc
gcggggttcaccctggccagccacgacatggagatccgcggtgccggcgagctgctcggc
gaggagcagagcggccagatggaggccatcggctacaccctctacatggagatgctcgat
cgcgccgtggccgccatccgtgccggcaagacgcccaacatcgaagcgccgctgagcgat
ggcgtcgagatcagcctcaacctgccggcgctgatccccgacgactacctgcccgacgtc
cagcagcgcctggtgatgtacaagcgcatcgccagcgccgccgacgaggccgagctcaag
gagctgcaggtggagatgatcgaccgcttcggcctgctgccggccgcggtcaagaccctg
atgcgccagacccgcctgcgccagcgcgccgaacgcctgggcatcgtgcgcctggaggcc
ggcgcccagcggggccgggtgatcttcggtggccagacccgggtcgacccgctgacgctg
gtcaagatgatccaggccgagccgcagcgctaccggctcgacggcgccgacaccctgcgc
ttcaaaggcgagatggaagacgccgaggcccgcttccaggccatcgagcagctgctcgat
ggcctcaatcgcaaggccaaggccgcctga
DBGET
integrated database retrieval system
