Halomonas sp. SS10-MC5: I4484_18170
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Entry
I4484_18170 CDS
T07024
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
hcam
Halomonas sp. SS10-MC5
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcam03021
]
I4484_18170 (rapA)
Transcription machinery [BR:
hcam03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
I4484_18170 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
DUF6098
Helicase_RecD
Flavi_DEAD
SIS_2
Motif
Other DBs
NCBI-ProteinID:
QPP49095
UniProt:
A0A7T1Y316
LinkDB
All DBs
Position
3905360..3908311
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AA seq
983 aa
AA seq
DB search
MSDFSPGQRWISDGEADLGLGTILSCDHRSVTVLFGASQETRTYSSRQAPLTRVAFGSGD
RIQSSDGWHLTVDDSKEVDGLIVYIGEDDQGELRELPEARLADTMQFDQARDRLLTGQVD
RNDWFDLRFRTLHHHHRIEQNPALGLAGPRIDLIPHQLYIADEVARRHAPRVLLADEVGL
GKTIEAGLILHRMLLTGRAQRALILVPPSLTHQWLVELLRRFALEVTLLDEQQSLAQAES
NPFESGQLILASQEWLFANPHRQEQAASSDWDLLIVDEAHHLDWSADQVGPGYACVERLA
KAVPGVLLLTATPEQMGLESHFARLRLLDPDRYHSLDAFRDEEQHYVEVAQSIDALEALP
AGGREARSSVAAVIDEPDSLALLDLLSNPECGAAQQASARDQLREQLLDRHGTGRVMFRN
SRRHVGGFPERRLHLAALTLPSAYRRVLRKLERDEDYLDELLIETGLDHPDVLIYPDATY
RALSDDPLNAEPWWQFDPRVTWLLERLADDSEQGFANDKVLVIAHGRETAQGLAEALRVL
GGLHAPVFHEGLTLVERDRAAAAFADEEEGSQVLVCSEIGSEGRNFQFCRHLVMFDLPQH
PDQLEQRIGRLDRIGQRHAIEIHVPLFEASPGERLLRWFSEGMEAFASPHGVGNELFDAF
GDALAEALLDDEALEDVISETRALFENRLAQRDAGRNRLLELNACRPARAEAVAAAIREL
DDDPALTRYLDQALDIFGVDGQELGGGLLHLQPGPQMLDGLPGLAKGEEGFTATLSRERA
LARDDVQRLSWEHPLLREMMARILDGTMGNTALALLQHPAIPAGRLMTELVFRTYCPAPR
RLHVNRFLPPTAVRVLLDESGAVLSDKVSFTGLSKNLRKVKKAMARDLIRSRHDQLRELL
VLGEQEAERELPSIVEGAQVRMRRELDGELARLEALARLNPAVREAELEALRRERGELDA
AIDGTRLRLDAVRVIVTVGEESR
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacttttcacccggccagcgctggatcagcgacggcgaggccgacctgggcctg
ggcaccatcctgagttgcgatcaccgtagcgtcaccgtgctgttcggcgccagccaggaa
acccgcacctacagcagccgccaggcgccccttacccgggtcgccttcggcagcggtgac
cgcatccagtcgagcgatggctggcacctgaccgttgacgacagcaaggaggtcgacggg
ctgatcgtatacatcggcgaggatgatcaaggcgagctgcgcgagctgcccgaggcccgc
ctggccgacaccatgcagttcgaccaggctcgcgatcgcctgttgaccggccaggtcgac
cgcaacgactggttcgacctgcgcttccgtaccctgcaccaccaccaccgcatcgagcag
aacccggcgctgggcctggccgggccgcgcatcgacctgattccccatcagctctacatc
gccgacgaagtggcccggcgccacgcgccccgcgtcttgttggccgacgaggtggggctg
ggcaagaccatcgaagccggcctgatcctgcaccgcatgctgctcaccggccgcgcccag
cgcgcattgatcctggtgccgccgagcctcacccaccagtggctggtggagctgctgcgc
cgcttcgccctcgaggtgaccctgctcgacgaacagcagagcctggcccaggccgagagc
aaccccttcgaatccggccagttgatcctggccagccaggagtggctgttcgccaacccg
catcgccaggagcaggctgccagcagcgactgggacctgctgatcgtcgacgaagcgcat
cacctcgactggagcgccgaccaggtcggcccaggctacgcctgcgtcgagcgcctggcc
aaggcggtgccgggtgtgctgctgctcaccgcgactcccgaacagatggggctcgagagc
cacttcgcccgcctgcgcctgctcgatccggatcgctatcacagcctcgatgccttccgc
gacgaggagcagcactacgtggaagtggcgcagtccatcgacgccctggaagccctcccc
gccggtggccgcgaggcgcgcagcagcgtggcggcggtaatcgacgagcccgacagcctg
gccctgctggacctcctgtccaaccccgagtgcggagccgcgcagcaggccagcgcccgc
gaccagctgcgcgagcaactgctcgaccgccatggcacgggccgggtgatgttccgcaac
agccgccgtcatgtgggcggttttcccgaacgtcgcctgcacctggcggcactgacgctg
ccctcggcctaccgccgcgtgctgcgtaagctcgagcgtgacgaggactatctcgacgag
ctgctgatcgagaccgggctcgaccaccccgacgtgctgatctaccccgatgcgacctat
cgcgcgctctcggacgacccgctcaatgccgagccctggtggcagttcgatccgcgcgtg
acctggctgctggagcggcttgccgacgacagcgagcagggcttcgccaacgacaaggtg
ctagtgatcgcccatggacgcgagaccgcccagggcctggccgaggccctgcgggtgctg
ggcgggctgcatgcgccggtgttccacgaggggctcacgctggtcgagcgcgaccgggcg
gctgccgctttcgccgacgaggaggaaggcagccaggtgctggtgtgctcggagatcggc
tccgagggacgcaacttccagttctgccgccatctggtgatgttcgacctgccgcagcac
cccgaccagctcgagcagcgcatcggccgactcgatcgcatcggccaacgccacgccatc
gagattcacgtgccgctgttcgaggccagccctggcgagcgcctgctgcgctggttcagc
gagggaatggaggccttcgcttcgccccacggcgtcggcaacgaactgttcgatgccttc
ggcgatgccctggccgaggcgctgctcgacgacgaagcgctggaagacgtcatcagcgag
acccgggcgctgttcgaaaaccgcctggcccagcgcgacgccggccgcaaccggctgctg
gaactcaacgcctgtcgcccggctcgcgccgaggcggtggccgcagcaattcgcgagctc
gacgacgacccggcgctgacgcgctatctcgaccaggcgctggatatctttggcgtcgat
ggccaggagctcggcggcggcctgctgcacctgcagcccggcccgcagatgctcgacggc
ctgccagggctggccaagggcgaggaaggcttcaccgccaccctgtcgcgcgagcgcgcc
ctggcccgcgacgacgtgcagcgcctctcctgggagcatccgttgctgcgcgagatgatg
gcgcgcatcctcgacggcaccatgggcaacaccgccctcgccctgctccagcatccggcc
attccggccggacggctgatgacggagctggtgttccgtacctactgcccggcccccagg
cgcctgcacgtcaaccgcttcctgccaccgaccgcggtgcgcgtgctgctcgacgagtcg
ggtgcggtgctcagcgacaaggtctccttcaccggcctgtcgaagaatctgcgcaaggtc
aagaaggccatggcccgcgacctgatccgcagccgtcacgatcagctgcgcgagctgctg
gtcctgggcgagcaggaggccgagcgcgagctgccgagcatcgtcgagggggcccaggtc
cgcatgcgtcgggaactcgacggcgagctggcccgcctggaggcgctggcccgtctcaac
ccggcggtacgcgaggcggagctcgaggcgctgcgtcgcgaacgcggcgaactcgatgcc
gccatcgacggcacgcggctgcggctcgatgcggtcagggtcatcgtcacggtgggggaa
gagagccgctga
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