Halomonas sp. SS10-MC5: I4484_19560
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Entry
I4484_19560 CDS
T07024
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hcam
Halomonas sp. SS10-MC5
Pathway
hcam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I4484_19560 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcam03019
]
I4484_19560 (pcnB)
Enzymes [BR:
hcam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
I4484_19560 (pcnB)
Messenger RNA biogenesis [BR:
hcam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I4484_19560 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QPP49340
UniProt:
A0A7T2DAX5
LinkDB
All DBs
Position
4180548..4181948
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AA seq
466 aa
AA seq
DB search
MFKGFTRFLQSPGTHFRTLFGPQDASGGQAGPRIVPRDQHPISRQHFSEAALKVLYRLHN
AGFEAYLVGGCIRDSLLGKMPKDFDVATDATPEQVRELFRNSRIIGRRFRIVHVRFGREV
IEVTTFRGTHGDDHGDHIAQQSEHGLLLRDNVWGNIQEDAIRRDFTVNAIYYSIADFSIH
DFADGMRDIESRTLRLIGDPAVRYREDPVRMLRAVRFAAKLDFHLAPDSEAPIAELAPLL
LQIPPARLFDEVLKLFMAGHGVETFQLLRHYGLFAMLFPETDEAMAELPWAEPLIEQALA
STDRRIHEEKPVTPAFLFAALLWGPVQRRQNALEAEGMPPIPALQLASQQVLSRQLRHIS
VPKRFSLPMRDIWDLQQRLPQRRGKRALQTREHPRFRAAYDFLLLREAAGEIEPGLGEWW
TAYQEGDEHEQRRLLEKAGANAGPGSDGPRRRRPRKRRRRSSPGSS
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaggatttacccgctttctgcagagccctggcacacacttcaggaccctcttc
ggcccccaggacgcttccggggggcaggcaggccctcgaatcgttccccgcgaccagcat
cccatctcgcgccagcacttcagcgaggcggcgttgaaggtgctctaccgcctgcacaac
gccgggttcgaggcctatctggtcggcggctgcatccgcgactcgctgctcggcaagatg
cccaaggacttcgacgtcgccaccgatgccacgccggaacaggtgcgcgagctgtttcgc
aactcgcgcatcatcggccggcgtttccgcatcgtgcacgtgcgctttggccgcgaggtg
atcgaggtcaccaccttccgcggcacccacggcgacgaccatggcgaccacatcgcccag
cagtcggagcatggtctgctgctgcgcgacaacgtctggggcaacattcaggaagatgcc
atacgccgcgacttcaccgtcaacgcgatctactacagcatcgcggacttctccatccac
gattttgccgacggcatgcgcgacatcgagtcgcgcaccctgcgactgatcggcgacccg
gcagtgcgctatcgcgaggatccggtgcggatgctgcgcgcggtgcgcttcgcggccaag
ctcgattttcatctcgcgccggattctgaagcccctatcgccgagctcgcgccgctgctg
ctgcagatcccgcccgcccgactgttcgacgaagtgctcaagctgttcatggccggccac
ggcgtggaaaccttccagctgctgcgccactacggcctgttcgccatgctcttccccgag
accgacgaggccatggccgagctgccgtgggcggagccgctgatcgagcaggccctggcc
agcaccgacaggcgaatccacgaggagaaaccggtgaccccggcgtttctcttcgcggcc
ctgctgtggggccccgtacagcgtcgccagaacgcgctggaagccgagggcatgccgccc
attcccgcgctgcagctcgcctcccagcaggtcctgtcgcgccagttgaggcacatctcg
gtacccaagcgcttcagcctgccgatgcgcgacatctgggacctccagcagcgcctgccc
cagcgacgcggcaagcgcgccctgcagacccgcgagcatccgcgcttccgtgccgcctac
gacttcctgctgctgcgagaagcggccggcgagatcgagcccggtctcggcgagtggtgg
acggcctaccaggagggcgacgagcacgagcagcgccgcctgctggaaaaagccggtgcc
aacgccggccccggtagcgacggcccccgccgccggcgcccacgcaaacgtcgccggcgc
agctcacccggcagctcatga
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