Halomonas sp. SS10-MC5: I4484_20435
Help
Entry
I4484_20435 CDS
T07024
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hcam
Halomonas sp. SS10-MC5
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hcam03016
]
I4484_20435 (thpR)
Enzymes [BR:
hcam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
I4484_20435 (thpR)
Transfer RNA biogenesis [BR:
hcam03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
I4484_20435 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QPP49497
UniProt:
A0A7T1Y3Y7
LinkDB
All DBs
Position
4365271..4365783
Genome browser
AA seq
170 aa
AA seq
DB search
MRLFVALTPPPELRARLGELADIAHARCGGRRMPDASLHVTLTFLGEVTEAQAAELVAWV
QGLSITPGEWHINRWGSFRRPGIVWLGGDEGAPALQRLQGRLWGTLEPLGVGVRPARYIP
HVTLLRRATVLDLDPFPPIALTWSYNQLELIQSTIDERGARYRSLAVSQG
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgagactttttgtcgccctgaccccaccgcccgagctgcgagcgcggctcggcgagttg
gcggatatcgcccatgcccgctgcggcgggcgacgcatgcccgacgcgagcctgcatgtc
acgctgacctttctcggtgaagtcacggaggcgcaggcggccgagctggtcgcgtgggta
cagggcctgtccatcacacccggcgagtggcacatcaaccgctggggcagcttccggcga
cccggcatcgtctggctcggtggcgacgagggtgcaccggcgctgcagcgcctgcagggg
cggctctggggcaccctcgagccgctgggcgtcggcgtgcgtcccgcccgatacattcca
cacgtcaccctgctgcggcgggccaccgtccttgacctggatccctttccccccatcgcc
ctgacgtggtcctataatcagttggagctgatccaatcgactatcgacgagcggggtgcc
cgctaccggagcctggccgtatcgcagggttga
DBGET
integrated database retrieval system
