Helicobacter cinaedi CCUG 18818 = ATCC BAA-847: HCBAA847_0096
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Entry
HCBAA847_0096 CDS
T02494
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hcb
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
Pathway
hcb03030
DNA replication
hcb03430
Mismatch repair
hcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCBAA847_0096 (dnaX)
03430 Mismatch repair
HCBAA847_0096 (dnaX)
03440 Homologous recombination
HCBAA847_0096 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcb03032
]
HCBAA847_0096 (dnaX)
03400 DNA repair and recombination proteins [BR:
hcb03400
]
HCBAA847_0096 (dnaX)
Enzymes [BR:
hcb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HCBAA847_0096 (dnaX)
DNA replication proteins [BR:
hcb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HCBAA847_0096 (dnaX)
DNA repair and recombination proteins [BR:
hcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HCBAA847_0096 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
RuvB_N
AAA_22
AAA_30
AAA_14
AAA_5
AAA_16
AAA_19
RCF1-5-like_lid
TIP49
DEAD
DUF4760
ResIII
AAA_assoc_2
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
BAM31356
UniProt:
A0AAI8MKR0
LinkDB
All DBs
Position
104842..106530
Genome browser
AA seq
562 aa
AA seq
DB search
MSSIALALKYRPASFSDLVGQNAISQTLSLALDSKHISHAYLFSGLRGSGKTSSARIFAR
ALECESGPISTPCGSCASCVAALENRHIDIIEMDAASSRGIDDIKKLIEQTKYRPSFGRY
KIFIIDEVHMLSKEAFNALLKTLEEPPEFVKFILATTDPLKLPATILSRTQHFRFKQIPH
RLVVEHITNILNKEGVSYEQEALEMIARSGSGSLRDTLTLLDQAIIFCKNHIEVASVSDM
LGIVDPQVLKEYFQGILHHQHDKVSGILQVLYEYECEMILDEMMLFLKEKLLQRDSDFPP
LLLDRFARILTESKSLLNLNTDGAFVLLLCAMKMQEAIKVKDIETMIEELENEIFGANQN
KVLNSTSALSSLPSSPQNPQAPQTPADSQNPQAFESPQAPAQTPSLDSQKTLGALHFQTL
IQKITDRNAELGEIFEKNVKFVEFSREKSLLRWQSVAQGEHKEKLREFGKIIVSLVREIF
GANTHIEQVQDNIQDSNSQATQDSQSPQNLQNPQAQSPQNQQEGLQKFTSQNRDVIEAIR
DSVGIKEVLVQNDKQDKGDENA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaatcgcccttgctttgaagtatcgtccagcgagttttagcgacttggttggg
caaaatgctatctctcaaacgctctcccttgcgttagattctaagcatatttctcacgcg
tatctttttagcggactgcgtgggagtgggaaaacaagctcggctagaatctttgctaga
gcattagaatgcgagagtggtcctatcagcacaccttgcgggagttgtgcgagttgtgta
gcggcattagaaaatcggcatatagatattattgaaatggacgcggcgagttctaggggg
attgatgatattaaaaagctcattgagcagacaaaataccgccctagctttggacgctat
aagatttttatcatagatgaggtgcatatgttgagtaaagaagcgtttaatgccctatta
aaaacgcttgaagagccaccggaatttgtgaaatttatccttgcgacaactgatccgctt
aagctccctgcgactatccttagccgaactcagcattttaggtttaagcagattccccat
aggcttgttgttgagcatatcacaaatattttaaataaagagggtgtgagctatgagcaa
gaagcccttgagatgatcgcacggagcggatctgggagcttgcgagatacactcacctta
cttgatcaagctattattttttgtaaaaatcatattgaagttgcaagtgtgagtgatatg
ctaggcatagtggatccgcaggttttgaaagagtattttcaaggcattttgcaccatcag
cacgataaagtcagtgggattttacaagtgctgtatgaatatgaatgcgagatgatactt
gatgaaatgatgctctttttaaaggagaaacttttgcaaagggatagcgactttccgcct
ttgctgctagataggtttgctaggattctcacagaatctaaaagtttgttaaatcttaac
accgatggggcgtttgtgcttttactctgtgcgatgaaaatgcaagaagccataaaggta
aaagatatagaaactatgattgaagagctagaaaatgagatttttggagcaaatcaaaat
aaggtgctaaattctacttctgctttatcttctttgccctcttcgccacagaatccacaa
gccccccaaactccagcagattcacagaatccccaagcttttgaatctccacaagctccc
gcccaaacaccttctttagattcacaaaaaacgctaggggctttgcattttcaaaccttg
atacaaaagattacagatcgcaatgccgagctaggcgagatttttgaaaaaaatgtaaaa
tttgtggaatttagcagagaaaagtcgctgttgcgttggcagagtgtagcccaaggggag
cataaggaaaaattgcgtgagtttggtaagattattgtaagtcttgtgcgggagattttt
ggtgcaaatacgcatatagagcaagtccaagacaatatccaagattctaactcacaagcc
acacaagattcgcaaagtccgcaaaatttgcagaatccacaagcccaaagcccacaaaat
caacaagaagggctacaaaaatttacaagccaaaatcgcgatgtgattgaagctattcgc
gatagtgtggggataaaggaagttctcgtgcaaaatgacaaacaagataagggcgatgag
aatgcgtga
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