Helicobacter cinaedi CCUG 18818 = ATCC BAA-847: HCBAA847_0187
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Entry
HCBAA847_0187 CDS
T02494
Symbol
rep
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hcb
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
Pathway
hcb03420
Nucleotide excision repair
hcb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCBAA847_0187 (rep)
03430 Mismatch repair
HCBAA847_0187 (rep)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcb03400
]
HCBAA847_0187 (rep)
Enzymes [BR:
hcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCBAA847_0187 (rep)
DNA repair and recombination proteins [BR:
hcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCBAA847_0187 (rep)
MMR (mismatch excision repair)
Other MMR factors
HCBAA847_0187 (rep)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
Viral_helicase1
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAM31442
UniProt:
A0AAI8MH94
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All DBs
Position
198317..200347
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AA seq
676 aa
AA seq
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MPLSTLNAEQLAAATAPSGHNLIIASAGTGKTSTIVGRIAYLLQQGFKPKDILLLTFTNK
ASSEMIERVGKIFGSSLAKEIESGTFHAVAYRYLRQMKNIHLKQPKELQMLFKSLYEKRV
FSQDSIKPYSAQYLYEIYSLFVNAAYKGGFGAWIVDRNPQQEPYIAIYEDVMEEFKALKH
THHYADYNDLLLLYRESLLELSSPPFMEVLCDEYQDTNPLQDSILDALRPQSLFCVGDYD
QSIYAFNGADISIISGFGEKYADSKVFTLSKNYRSSKHILELANKVIEKNERVYPKRLEV
IKQGEFAPPKLVWYDELFLQYQGIAKRIALSNISYENTAIIFRNNSSADGIEASLRELNI
PSKRKGSVSFFDTKEVSLILDICSLTHNPRDMMAHIHTLSYGKGIGNSIAKDIYEALFIL
GEGDCHRGMFSPKSDVKAYQQRAKNTQLGLFDDFFALESQGRFNEYIIGGFASHPLLQHP
KIQKEGAIFLSDFYEMLDSIRHIKEPKRLIERIVNAKFFTDIMPNLAKNRSKTKEGSIDS
ARLEQALESIKRKCSLLLDLAKNHNDLGKFLNAMILGSSEASEGSGVNLLSIHASKGLEF
QNVYVVDLMDGRFPNRKLISKGGSIEEERRLFYVAITRAKENLILSFAKKDNMKNIDYAP
SIFLYEGELLSKDSVV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgccactctccacccttaacgccgagcagttagccgccgctactgctccaagcggacat
aatcttattatcgcttcggctgggacgggcaagacttccacgattgtggggcgtatagcc
tatcttttgcagcagggctttaagcctaaagatattttattgcttacctttacaaacaaa
gcaagtagtgagatgattgagcgagtggggaaaatctttggctctagccttgctaaagag
atagaatctggcacatttcacgccgtggcgtatcgctatttgcgacagatgaaaaatatc
catcttaaacagcctaaagaattgcaaatgctctttaaaagtctgtatgaaaaacgcgtt
tttagccaagattccattaagccctattccgcacagtatttatatgaaatctattcgctt
tttgtcaatgctgcgtataaaggtggctttggggcgtggatagtagataggaatccgcag
caagagccatatattgctatttatgaagatgtaatggaagagttcaaggcattaaagcac
acacatcattatgcggattacaatgacttgcttttattgtatcgtgaatctttgctagag
cttagctcaccgccatttatggaagtgctatgcgatgagtatcaagacactaatccactg
caagattctatccttgatgcacttagaccccaaagtttattttgcgtgggggattatgac
caaagcatttatgcgtttaatggggcggatattagcataatcagcggctttggggaaaag
tatgcagattcaaaagtttttactttaagcaaaaattaccgctcaagtaagcatatcctt
gaacttgctaataaagtgatagagaaaaatgaacgggtatatcccaaaaggctagaagtg
attaaacaaggtgagtttgccccaccaaagcttgtgtggtatgatgagctgtttttgcag
tatcagggcattgccaaacgcatagctttaagcaacatatcttatgaaaataccgctatt
atttttcgcaataattcaagtgccgatgggattgaggcgagtttgcgagagctaaatatc
ccttcaaaacgcaaggggagtgtgagcttttttgacacaaaggaagtgagcctgatactt
gatatttgctcccttacgcataatccacgcgatatgatggcacatattcatacgctgagc
tatggcaaaggcataggcaatagcattgctaaggatatttatgaggcgttgtttatctta
ggtgagggggattgccataggggtatgttttcgccaaagagtgatgtaaaagcctatcag
caaagggcaaaaaatacacagcttggactttttgatgatttttttgctttagaatctcaa
ggtaggtttaatgaatatattatagggggctttgcttcacacccgcttttgcaacaccca
aagattcaaaaagagggggcgatatttttaagtgatttttatgaaatgctagattctata
aggcatattaaagagccaaaaaggctgattgagcgaattgtaaatgcgaagttttttact
gacattatgccaaatctagctaaaaatcgctctaagacaaaagagggcagtatagattct
gcaaggcttgagcaggctttagaatctatcaaacgcaaatgcagccttttgcttgatttg
gcaaaaaatcacaatgatttggggaagtttttaaacgcgatgattctaggctcaagtgaa
gcaagtgagggtagtggggtaaatctattaagcattcacgcaagtaaggggctagagttt
caaaatgtgtatgtggtggatttaatggatgggcgatttccaaatcgcaaactcataagc
aagggcggaagcatagaagaggagcgacggctcttttatgtagccatcacgcgtgcaaaa
gaaaatcttatattatcctttgctaaaaaggataatatgaaaaacatcgactatgcccca
tcaatctttttatacgagggcgaattgttaagcaaagatagtgtggtttaa
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