Helicobacter cinaedi CCUG 18818 = ATCC BAA-847: HCBAA847_0453
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Entry
HCBAA847_0453 CDS
T02494
Symbol
recJ
Name
(GenBank) single-strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hcb
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
Pathway
hcb03410
Base excision repair
hcb03430
Mismatch repair
hcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HCBAA847_0453 (recJ)
03430 Mismatch repair
HCBAA847_0453 (recJ)
03440 Homologous recombination
HCBAA847_0453 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcb03400
]
HCBAA847_0453 (recJ)
DNA repair and recombination proteins [BR:
hcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HCBAA847_0453 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HCBAA847_0453 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCBAA847_0453 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
OKR_DC_1_N
Motif
Other DBs
NCBI-ProteinID:
BAM31700
UniProt:
A0AAI8ML44
LinkDB
All DBs
Position
446053..447645
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AA seq
530 aa
AA seq
DB search
MRKDECKSHTKQDILHFLQSRDLECGIRTLRDLPTPQNLNNTESGAKIITQAMERNNEIL
VVGDYDADGVCASAIISLFFKALEYQHFRLIIPHRFEDGYGVSAALLEKNAQNAAVVVSV
DNGITAFCAGQWCKAKGIPFIITDHHTPTDTLPQADVIINPMLQDSTFTQKSICGAVVAW
YFCAAIKQNLKANIDMGMFLEYLAIATIADVMPLTGINRILVKKGLESLRTSSNVLATLL
RESFARFKKPITAENLAFDFIPLLNCAGRMESANKALELLLSPSLAHATHIYTELQNLNN
KRKEIQQDILQKAQEHIIQTDDFVLSYGDSWHEGVLGIVAAKLARIYKKSAFVLSQNADV
LKGSGRSYGGANLIASITPLQQYCLGLGGHSGAVGLSLESCQLWTLIEKLQETMVYEECD
ENETFFTLGVKSVDMELFEILESFEPFGEGNPKPTFLLENLTIQEIKPLGREGKHFEYTL
ADSNGMCLAGLEFLAPTRREVGQCVDIHIELMRDYYKNCIKAKILEVFVR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaagatgaatgtaaaagccacacaaagcaagacattcttcattttctacaatct
cgtgatcttgagtgtggtatccgcaccctgcgagacttgcccacgccacagaatctaaac
aacactgaatctggagcaaaaatcatcactcaagctatggaaagaaataatgagattctt
gtcgttggggattatgatgcagatggtgtgtgtgcaagtgcgattataagcctttttttt
aaggcattggagtatcagcattttaggcttattattccacatcgctttgaagatggctat
ggcgtgagtgccgcccttttagagaagaacgctcaaaatgccgctgtggttgtgagcgta
gataatggtattaccgcattttgtgcagggcagtggtgcaaggcaaagggcattcctttt
atcatcacagatcatcacacacccacagatacgcttccgcaggcagatgtcatcattaat
ccaatgctgcaagattctacttttacccaaaaaagcatttgtggagcagtggtggcgtgg
tatttttgtgcggcgataaagcaaaatctcaaagcaaatattgatatgggaatgttttta
gaataccttgccattgccacaatcgccgatgttatgccccttacagggataaatcgcatt
cttgtgaaaaagggcttagaatcgcttcgcacctcttctaatgtgcttgccacacttttg
cgtgagagttttgctagattcaaaaagcccataaccgcagagaatcttgcctttgatttt
attccattgctgaattgtgctgggcgtatggagagtgcaaataaggctttagagcttttg
cttagtcctagtttagcccacgctacacacatttacacagagctacaaaatctcaataat
aaacgcaaagagattcagcaagacattctccaaaaggcacaggagcatattatccaaaca
gatgattttgtcctaagctatggggattcttggcacgagggggtgcttggcattgtggcg
gcaaaacttgcgagaatctacaaaaaaagtgcttttgtgttgagccaaaatgctgatgtg
ctaaaggggagcggacgctcttatggtggggcaaatttgattgcaagtatcacgccattg
caacaatattgccttgggttaggtgggcatagcggagctgtggggctaagtttagaatct
tgtcagctttggacattgatagaaaaattgcaggaaactatggtgtatgaagaatgcgat
gaaaatgagacatttttcacacttggggtgaaaagcgttgatatggagctttttgagatt
ttagaatcttttgagccttttggggaggggaatcctaagcctacatttttgctagaaaat
cttaccatacaagagataaagccactaggcagggaggggaagcattttgaatatactttg
gcggattctaatggaatgtgtctggcgggactagagtttttagcaccaactaggcgggag
gtggggcagtgtgtggatatacacattgagcttatgcgtgattattataagaactgcatt
aaagcaaaaatccttgaagtatttgtaaggtag
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