Helicobacter cinaedi CCUG 18818 = ATCC BAA-847: HCBAA847_0898
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Entry
HCBAA847_0898 CDS
T02494
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
hcb
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
Pathway
hcb00300
Lysine biosynthesis
hcb00470
D-Amino acid metabolism
hcb01100
Metabolic pathways
hcb01110
Biosynthesis of secondary metabolites
hcb01120
Microbial metabolism in diverse environments
hcb01230
Biosynthesis of amino acids
Module
hcb_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hcb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
HCBAA847_0898 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HCBAA847_0898 (dapF)
Enzymes [BR:
hcb01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
HCBAA847_0898 (dapF)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DAP_epimerase
DUF1093
Motif
Other DBs
NCBI-ProteinID:
BAM32136
UniProt:
A0AAI8MMA9
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All DBs
Position
863536..864354
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AA seq
272 aa
AA seq
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MQFVKYSSSGNDFLIFQSFERDNGGRSSLAKRVCERHNGIGADGMVVLLLGQDSKDSKKY
AYEWEFYNADGSKAKMCGNASRSIGHYAFVEGIAPRKHSFLSQAGIIGIIIDESDANLVQ
SDLGAYKLVEEHIVESNPYGVKAWALLDSGVPHLVGFVNDKKMLTYSKDEFLQTLREKYN
ANVNLAYIDESSDKSRILYMTYERGVEDITQACGTGAAAVFAMALRLGLCGKKALLIPPS
NEIFELQKTGNQHILFKGKVQRIAICEWLNSI
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttgttaaatatagtagcagtggtaatgactttttgatttttcaaagttttgaa
cgcgataatggggggcgttctagccttgcaaagcgtgtgtgtgagcgacacaatggcatt
ggtgctgatggtatggttgtgcttttgctggggcaggattctaaagattctaaaaagtat
gcgtatgagtgggagttttataacgctgatggttcaaaggctaaaatgtgtggcaatgcg
agcagaagtatcgggcattacgcatttgtggagggtatagctcctaggaagcatagcttt
ttaagtcaggctgggattatagggattataatagatgagagtgatgccaacttagtgcaa
agtgatttgggtgcttataagcttgtggaagaacacatagtagaatctaatccttatggc
gttaaagcgtgggctttacttgatagcggagtgccacaccttgtgggctttgtgaatgat
aaaaaaatgctgacatactcaaaagatgagtttttgcaaactttgcgtgaaaaatataat
gcgaatgtgaatcttgcctacattgatgaaagtagcgataaaagcaggattttgtatatg
acttatgaaaggggagtggaggacattacccaagcgtgtgggacgggtgcagctgcggta
tttgctatggctttaaggctaggcttgtgtgggaaaaaggctttgcttatcccaccaagc
aatgagatttttgagctacaaaagacaggaaatcagcatattttatttaagggcaaagtc
caacgcatcgccatttgcgagtggcttaattctatataa
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