Helicobacter cinaedi CCUG 18818 = ATCC BAA-847: HCBAA847_0945
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Entry
HCBAA847_0945 CDS
T02494
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hcb
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
Pathway
hcb03420
Nucleotide excision repair
hcb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCBAA847_0945
03430 Mismatch repair
HCBAA847_0945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcb03400
]
HCBAA847_0945
Enzymes [BR:
hcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCBAA847_0945
DNA repair and recombination proteins [BR:
hcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCBAA847_0945
MMR (mismatch excision repair)
Other MMR factors
HCBAA847_0945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
eIF3_p135
ADDB_N
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
BAM32183
UniProt:
A0AAI8MM79
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All DBs
Position
910994..913090
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AA seq
698 aa
AA seq
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MADSPLHQALQSLNPKQKEAATHIDGALLILAGAGSGKTKTLTTRLAYLINEVGIPPSAT
LTLTFTNKAAQEMRDRALSLLSNAYQAPPLLCTFHKFGLLFLRFYIKVLEREANFVVLDS
DDKKAILKSLSKALPVSHFDSYISNMKNSFLSPQEAAAYAHSPEYKLMNRIYAEYESYIQ
KKNLLDFDDLLYLTYKILSQRSDIAKEMSQRYQYIMVDEYQDTNELQYKILKSLCTTHNN
LCVVGDDDQSIYGWRGADIGNILRFAKEFSGATTIKLEENYRSSEEILQAANALIAHNTE
RLGKNLKSVKGSIQAVRVIENDDEAQEATFLAKEIARLCENGENPSDIAILFRVNALSRS
IEESFNRFKIPYKLMGAVRFYERAEIKDLLSYLRLIVNADDDFSFLRIINRPKRGIGKVT
QSKLEQLSQSKGLSCLACLEQYPLESKAHIGEKAYTALVKLQKDLSKWRNMTDLSEMIED
MQENLIFEFSPLDEVDREGNIYEFYGMFKDYVIHNPTNTLDEFLNDLALASPSDEAVGDC
VSCMSVHSAKGLEFKHIYVIGFEEGFFPLHRGENDELEEERRLGYVAFTRAKEHLSLCYS
KSRLYRGKREWQLRQSRFLKESGLVEGAESLQDSLSNTLESKNDEIEVGSQVVHKIFGVG
SVEGMEGKGEQCKLKINFGGLRRVIIRSFVQKLDESKS
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcagattcaccacttcatcaagcacttcaatctttgaatcccaagcaaaaagaggca
gccacacatattgatggggctttgctgattctagctggggctgggagtgggaagacaaaa
acgctcactacgcgtctagcttatcttattaacgaagtgggaatcccaccaagtgccaca
cttaccctgacttttacaaataaagccgcacaagagatgagagatagagcattaagcctt
ttaagtaatgcctaccaagccccgccacttctatgcacttttcataaatttggcttactt
tttttgcgtttttatattaaggtgttggagcgggaggcaaactttgtcgtgctagattct
gatgataaaaaggcgattttaaaatccttatcaaaagccctgcccgtatcgcattttgac
tcatatatttcaaatatgaaaaatagctttctctccccacaagaggcagcagcctacgct
cacagcccggaatataagctgatgaatagaatctatgccgagtatgaaagctatatacaa
aaaaagaatctacttgattttgatgatttactttatcttacctataagattctatcccaa
aggagtgatattgctaaagagatgagtcaaaggtatcaatacattatggtagatgagtat
caagacacaaatgagctgcaatacaagattctaaaatctctatgcacaacgcataataat
ctttgtgtcgtgggtgatgatgatcaaagcatttatgggtggcgtggagcggatattggc
aatattttgcgttttgctaaggaatttagcggggcaacgaccataaagctagaagaaaac
taccgctcaagtgaggagattttgcaagcagccaatgctttaatcgctcacaataccgag
cgtttgggtaagaatctaaaaagtgttaaaggctctatacaagcagttagagtgatagaa
aatgatgatgaagcacaagaagctacctttttggctaaagagatagcaaggctgtgtgag
aatggggaaaatccaagcgatattgctattttattccgtgtgaatgcgttatcaaggagt
attgaagagagctttaatcgctttaagattccatataagctcatgggggcggtgcggttt
tatgaacgagccgagataaaggacttgttaagctacttgcgtttgattgtgaatgcagat
gatgatttttcattccttaggattattaatcgcccaaaacgcgggattggtaaggttaca
caaagcaaactagagcagctctctcaaagtaaagggctttcctgccttgcgtgtttggag
caatatccattagaatctaaagcccacattggagaaaaggcatataccgcacttgtcaaa
ctacaaaaagatttatctaaatggcggaatatgacggatttgagtgagatgattgaggat
atgcaggagaatcttatttttgagtttagcccacttgatgaagtagatagggaagggaat
atctatgaattttatggtatgtttaaagactatgtcattcataatcccacaaatacttta
gatgagtttttaaatgacttagcccttgctagtcctagtgatgaggcggttggggattgt
gtaagctgtatgagtgtgcattcagcaaagggactagaatttaagcatatttatgtgatt
ggctttgaggaagggtttttcccactgcatcgtggggagaatgatgagctagaggaggaa
cggaggcttggctatgtcgcctttactcgtgctaaggagcatttgagtttgtgttatagt
aagagtcggctctatcgtggcaaaagggagtggcaacttaggcaatcaagatttttaaaa
gagagtgggctagtagaaggggcagaatctctgcaagattctctttcaaatactttagaa
tctaaaaatgatgaaatagaagtaggctcacaggtggtgcataagatttttggtgttgga
agcgtggagggtatggaaggcaagggagagcagtgtaagcttaagattaattttggtggt
ttaagacgcgtgattataagaagttttgtgcaaaagctagatgaaagcaaaagttag
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