Helicobacter cinaedi CCUG 18818 = ATCC BAA-847: HCBAA847_0981
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Entry
HCBAA847_0981 CDS
T02494
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hcb
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847
Pathway
hcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCBAA847_0981 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcb03019
]
HCBAA847_0981 (deaD)
03009 Ribosome biogenesis [BR:
hcb03009
]
HCBAA847_0981 (deaD)
Enzymes [BR:
hcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCBAA847_0981 (deaD)
Messenger RNA biogenesis [BR:
hcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCBAA847_0981 (deaD)
Ribosome biogenesis [BR:
hcb03009
]
Prokaryotic type
rRNA helicases
HCBAA847_0981 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Shikimate_DH
UvrA_inter
Ig-like_Pom152_1
Motif
Other DBs
NCBI-ProteinID:
BAM32219
UniProt:
A0AAI8QGY4
LinkDB
All DBs
Position
945503..947044
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AA seq
513 aa
AA seq
DB search
MTQDSQTPTQESPAQNEQSFETFGLKDFVLKGIKEAGFSSPSPVQAQSIPIVLQGKDLIA
QAQTGTGKTAAFSIPILNALSRNKEIEALVITPTRELAMQISEEVLKLGRFGRIKTICMY
GGQSIKRQCDLLEKKPKVMIATPGRLLDHLQNGRIENFAPKVVVLDESDEMLDMGFLDDI
EEIFKFLPNTHQTLLFSATMPEPIKNLALKILDKPEFVKITPTDITNKDIEQQYYIINEG
ERDEAIVRLLETQNPTKSIIFTRTKKEADALATRLVTKGFKAMALHGDMEQWDRRTAIKA
FKENEIELLVATDVASRGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAITLAT
PLEYKDLSKIKQITKAKLTLCEITQEYSDDAFSQEISHAKVNDKSVAIYEKLKDKVDTTQ
LCLKLIALHLEKSKQNKIGLSKEQIAQLESQSESKEQKHNKKSSKFSHNAKSKPQSQRNN
SRGNGRDMGGNKRGRKRYDDVDKSQPYTGSIWG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagattcacaaacacccactcaagaatctccagcccaaaacgaacaaagcttt
gaaacatttggcttaaaagattttgtgttaaagggcattaaagaagcgggatttagctct
cctagccccgttcaagctcaaagtatccctattgttttacaaggcaaagacttaatcgct
caagctcaaacaggcacgggcaaaacggctgcctttagtatccccattttaaatgccctt
agtcgcaacaaagagattgaagcccttgtgattacacccacacgagaacttgctatgcaa
attagcgaagaggtgctaaagcttgggcgatttgggcgtattaaaaccatttgtatgtat
ggggggcagagtatcaagcggcaatgtgatttgttagagaaaaagccaaaggtgatgata
gctacaccgggcagattgcttgatcacttgcaaaatggcaggatagagaatttcgctcca
aaggtagtagtgcttgatgaatctgatgaaatgcttgatatgggctttttagatgatatt
gaagagatttttaagtttttgccaaatacgcaccaaaccttgctcttttccgccacaatg
ccagagcctatcaagaatctagccttgaagattctagataagccggagtttgtaaaaatc
actcccacagatattacaaataaagacatagaacagcaatactacattatcaatgaaggg
gagcgagatgaagcgattgtgcggctacttgagacgcaaaatcccacaaaaagcattatt
ttcacacgcaccaaaaaagaagccgatgcattggcgacaaggcttgttacaaagggattc
aaggctatggcactgcacggcgatatggagcagtgggatagacgcacagccattaaggcg
tttaaggaaaatgagattgaactgcttgtggcaactgatgtggcttcgcgtgggcttgat
attagcgatgtgagccatgtgtttaactatcacataccgctgaatcctgaaagctatgtg
catcgcatagggcgaacaggcagggcagggaaaaagggtgtggctatcacccttgccaca
ccgcttgaatataaagatttaagcaagattaaacagattacaaaagcaaagctcacattg
tgtgagattacgcaggaatacagcgatgatgcgttttcacaagagatttcccacgctaag
gttaatgataaatctgtggcgatttatgaaaagcttaaagataaggttgatacaacacaa
ctttgccttaagctcattgccttgcatttggaaaaaagtaagcaaaataagattgggcta
agtaaagagcaaatcgcccagcttgaatcccaatccgaatctaaagagcaaaaacacaat
aaaaaatctagcaaattttcacacaatgcaaagtctaagccacaatctcaaagaaacaat
agcaggggtaatggtagagatatgggcggaaataaaagaggcagaaagcgttatgatgat
gtggataaaagtcagccatacacaggaagcatttgggggtag
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