Candidatus Hodgkinia cicadicola TETUND1: HCTETUND1_001
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Entry
HCTETUND1_001 CDS
T03595
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hcc
Candidatus Hodgkinia cicadicola TETUND1
Pathway
hcc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCTETUND1_001 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcc03021
]
HCTETUND1_001 (rpoB)
03400 DNA repair and recombination proteins [BR:
hcc03400
]
HCTETUND1_001 (rpoB)
Enzymes [BR:
hcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCTETUND1_001 (rpoB)
Transcription machinery [BR:
hcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCTETUND1_001 (rpoB)
DNA repair and recombination proteins [BR:
hcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCTETUND1_001 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
Motif
Other DBs
NCBI-ProteinID:
AHL30851
LinkDB
All DBs
Position
1..3618
Genome browser
AA seq
1205 aa
AA seq
DB search
MPFDNIQERLYVNSLLGSPDGAEVTSSKLRRELCALFPASSQLFGIELRDFWTEQYVLTT
SKALALKLEQGYAFNIKVSCLHYAKLCDALYVVHRDDVQAPLFHLPKISDRGTFEMFGLE
KVFVSQLARIPGVRANVKGSTVEVCLVSALGRALTVFANRRSAWLATDSKSKIEYFQALM
NAGVKRWHVLKALFETAVLLRYKLSWKRLTWRRSQSDVNPMEYGARRRLRSVPEFSAARS
GGALAAAAVRHDGKVVLHIGAKFDFDCRATLPVRVVYDCSTVRSFLNVEHCNRAFQINTQ
SLAAVNLGKAGRTMLNSITGQQLTSDCVSKRDLIFLWKRLRSENVHRVAQDGDARIVRSC
GDVVLDCVLFELRHILKLEPESIQASNDVLLLEFKRVKREVSKLFGMSELCQYAEQLNSL
TELCHKLRLTYMGEGGVTFRTATESLRDVQRWHFGRVCPVESPEGQNIGLVCSYALFSSV
ASSGLIQTAFNKVLNGRLSNKFEHLDCFRARSYATLVLNKRLSKQQALCTINGAIRHLPS
ARVELCYSSASQLFSPAVNLIPFLGYNDSTRALMAANMQKQAIPLTEPSAPIVGTGLERV
VMRCTGHNTVCVNNALIVHSDSYKIVAHEYELGSYRVYKLPLPWATNQGTCFRVRAAVRP
GQLVKSGQHIIECQSSANSEVALGANLLVAFMVWNGLNYEDSVVLSEDVVARGALQSLHM
LECEVKLYKTILGDEVLADVFESDRRLTENGVVRVGSVVSDGDVLVGKFTPSCVSCSQLV
YRDSSYKLPAGTGKATVVSVQFSADASGVQASDLNYCAACYNAIRETYAKRMAVLAETSK
LFRYNSIDCEIFCWASSELNIQRAINNLYNRYCEELGALIKQCSNELDTAAAAKLKLSKA
DTNVIEVIKLKLLIRKSIQAGDKISGRHGNKGVISRVVLAADMPYMADGTPIDVVLNPLS
VPSRMNLGQVLEAHLGLISYKWGLEFKHILRLHNQLNGNDSVIELARLKLSELYPDSDFS
CCDAVSVMEMVRETCEGARFACHPFIKLSEPCVKSLFKRVGFRSDFSAQIKLYDGKTGSP
FDRKVTVGSMYILKLNHMVDDKLNARATGPYSIVTQQPLKGKANKGGQRLGEMEVWALQA
YGVSFLLREALTVKSDDVEGRKGVNDGILFDRIKMRTTWNESFLVLIREMCSLCLNVELR
AKFCR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
ttgccttttgataacatacaagagaggctgtacgtaaacagcttacttgggtcaccagat
ggcgccgaagtaacaagttcaaaattgcggcgtgagctgtgcgctttgtttcccgctagc
tcgcagctgtttgggatagagcttcgcgatttttggacagagcaatacgttctaactact
tccaaggcgttagcactcaaactggagcaagggtacgctttcaatattaaggtaagctgt
ttgcattacgctaagctttgcgacgctttgtacgtggttcacagagacgatgtgcaagcg
ccattgtttcatctgcccaagatatctgatagaggcacgttcgagatgttcggcttggag
aaggtgtttgtgtcgcaactggcgcggattccgggtgtgcgcgcgaatgtaaagggttcg
acagttgaggtgtgtttggtgtcggcgttagggcgcgctttaacagtgtttgcgaacagg
cgcagcgcctggttagcgactgactctaagtctaaaatcgagtactttcaagctctaatg
aacgctggcgttaagcgctggcatgtgttaaaggcgctgtttgagactgctgtgctgctg
cgttataagctgagctgaaaacggctcacgtgacgtcgttcgcaaagcgacgttaatccg
atggaatacggtgcgcggcggcgattaaggtctgtgcccgagttttcggcagcgcgctcc
ggcggcgcgctggctgccgcggctgtgcgccacgatggcaaagttgtgttgcacatcggc
gcaaagttcgattttgactgtagagcaacgctgccagtgagggtggtgtacgattgcagt
acagtgcgctcatttttaaacgttgagcattgtaatagggcgtttcaaatcaacacgcag
agtttggcagccgttaacctcggcaaagccgggagaactatgcttaacagcattacgggt
cagcagctcacatcagactgcgtgagcaaacgcgatcttatattcttgtgaaagcgtttg
agaagcgaaaacgtgcacagggtggcgcaagacggcgacgcgcgaatagtgagaagctgt
ggtgatgttgtgttagattgtgtgctgttcgagcttaggcacattctaaaactggagccc
gagagtatccaggcttcgaacgatgtgctgcttttagaatttaagcgagttaagcgcgaa
gtcagcaagctttttggtatgtctgagctttgccagtatgctgaacagcttaatagctta
acggaattgtgtcataagcttaggttaacgtatatgggcgaaggcggtgtaacgtttcga
actgctacagagagcttgagagatgttcagcggtgacattttgggcgagtgtgtcccgtg
gaatcgccggagggccagaatattggcctagtgtgctcttacgctttgttttcttcggtg
gcttcgagtgggttaatacagactgcgtttaacaaagttcttaatggccgattgagtaac
aagtttgaacacctcgattgctttagagctcgaagctatgccacactagttttaaacaaa
agattgagcaagcagcaagcgttgtgtactataaacggcgcaatacgacatctgccttcg
gctcgggtggaattgtgttactcttcggcttcgcagctgttctcgcccgcagtgaaccta
attcctttcttaggctataatgattccacgcgtgcgctgatggctgcgaatatgcagaag
caagctatacccttaacagagccctcggcgcctatagttggaactggtttggagcgcgtt
gttatgcgctgcaccggacataacacagtttgtgttaacaatgctctaattgttcattcc
gattcttacaaaatagtggcgcatgagtatgagctgggctcatacagggtttataaattg
cctttgccttgggccactaaccagggcacttgttttagggttagggcggcggtacgcccc
ggtcagctagttaaatcgggtcaacacattatagagtgtcagtctagcgccaactctgaa
gtcgctttgggcgctaatttgttagttgcgtttatggtttggaatgggcttaactacgaa
gactccgtggtgctgtccgaagacgtggtggccagaggcgcgctccagtcgctgcatatg
ctggaatgcgaagtcaagctttacaaaacaatattgggtgatgaggtattagccgatgtg
tttgagtcggatcggcgtctgactgaaaatggcgtagtgcgcgtaggcagtgtggtgagc
gacggcgatgtgctggttggcaagtttacgccttcgtgtgttagctgtagccagcttgtg
tacagagactcgtcttataagctgccagcgggcactggcaaagccactgtggtaagcgtg
cagtttagcgcggacgcttcgggcgttcaggcgtccgatttaaactattgcgcagcgtgt
tataatgcaatacgcgagacttacgctaagcgtatggcagtgttagctgaaactagtaag
ctgtttcgctataacagcatagactgcgaaatattttgttgagcttcgagcgaattaaat
atacagcgtgcgattaataatttgtataatcgatattgcgaagagcttggcgcgcttatt
aagcagtgttccaacgagcttgatactgcggcggccgctaaacttaagcttagcaaagcg
gacactaacgtgattgaagtgattaagcttaagctgcttattcgcaaatctattcaagct
ggcgacaaaatcagtgggaggcacggtaacaaaggggttatatcgcgtgttgtgcttgcg
gccgatatgccctatatggcggacggcacgccgatagacgtggttctgaatcctttgagt
gtgccctctaggatgaaccttgggcaagtgcttgaggcacacttaggtttaataagctat
aaatgaggtttggaatttaaacacattctgaggctgcataatcagcttaatggcaacgat
agtgttattgagcttgctaggcttaaactaagcgagttgtatcctgattccgatttcagt
tgctgcgacgccgttagcgttatggaaatggttcgagaaacgtgtgagggtgcgagattt
gcttgccatccgtttattaaactcagcgagccgtgtgttaagtcgctttttaaacgcgtc
ggttttagaagcgatttttcagcgcaaataaaattgtacgacggcaaaactggttcgccg
tttgatagaaaggtgaccgttggcagcatgtacattttaaaactaaatcatatggtcgat
gacaaactgaacgctcgcgctaccggaccgtattcaatagtgacccaacagcctctaaaa
ggcaaggctaacaaaggcggtcagcgtttgggtgagatggaggtgtgagctcttcaagcc
tatggggtgtcgtttcttttgagagaggcgcttactgttaaaagcgacgacgttgagggc
agaaagggggtaaacgatggcatattgtttgatagaatcaaaatgcgcactacttggaac
gagagctttttggtgttaataagggaaatgtgctcgctgtgtctaaacgttgagcttaga
gccaaattttgtaggtag
DBGET
integrated database retrieval system
