Candidatus Hodgkinia cicadicola TETUND1: HCTETUND1_040
Help
Entry
HCTETUND1_040 CDS
T03595
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hcc
Candidatus Hodgkinia cicadicola TETUND1
Brite
KEGG Orthology (KO) [BR:
hcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HCTETUND1_040 (dnaE1)
03430 Mismatch repair
HCTETUND1_040 (dnaE1)
03440 Homologous recombination
HCTETUND1_040 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcc03032
]
HCTETUND1_040 (dnaE1)
03400 DNA repair and recombination proteins [BR:
hcc03400
]
HCTETUND1_040 (dnaE1)
Enzymes [BR:
hcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HCTETUND1_040 (dnaE1)
DNA replication proteins [BR:
hcc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HCTETUND1_040 (dnaE1)
DNA repair and recombination proteins [BR:
hcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HCTETUND1_040 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF648
Motif
Other DBs
NCBI-ProteinID:
AHL30880
LinkDB
All DBs
Position
complement(27341..30313)
Genome browser
AA seq
990 aa
AA seq
DB search
MCWRWRTRLNSGVFANLKVHSVYSILESALSLEKIAELTLKHSQRSVCLTDNNLHGALEF
CVKCRSVNVQPIVALKVLIDDQHALFNAPTKPSIATLIVRTERGYANLLKLINASAPELG
HRVITLAQLEAHSEGLTLLLGEVGGLAWEVYKQFEADAITARLDLLRQIVNNNLCFELQR
RSFVNQQFETTLTEYAETHSLLVVATNETFFEAPQDYSVYKALCVVSRTQRSSVTSQNYF
KSYAEMLTRFADVPRALNNCGRLCNACEFYLETRPLTLPAFLSSQTLENSVLYKRLIISL
ERLFYSVGKVNKRAYYKRLIGELRVVSRTRYAGYFLMVMDFVLWAKTNNILVGPGRGSAA
GSLLAYCANITNVDPLQYGLLFERFLNAARANPPDIDVDFCHVAREELIRYVQARYTAAN
VAQISTFGVLQLRGAIKDAGRCLQIKFETLNNVCAALPMHPRVKVTNSMLLACCAKALIP
QHTAIELIATAEKLVGVYRHVGTHAAGVVISNSPLADQVPVVWDTQNKINVTQYNMGWVD
AAGLPKFDLLGLKTLTVVDGVLELLAINRIEPNINFKDEKTYSFISRGLLLATFQLESKG
ITKHVEHMKPSSLNDLAALIALYRPGPIQQIKLYSDIKHGRAKRAKIHSKIDSVLDDTYG
IIVYQEQVMLIAQALSGYSLVEADELRKAMAKKNKSEMLAHTKRFVDGAAANGVDKQLAA
SVFETLVRFADYGFNKSHAVAYAMLAYTTAYLKCNFTLEFYAVCLTVETNEANEITDLYY
EALKLEVEFAQPSVQAPYNEFKIINSVIQFPLSAIKNVPQTAISSIAASKTNKPFTSLTD
FCCKCDSKLITENVLRSLILGGAFDCFQLSRTKMISNLKLIQDCIRFKTDISLIALDYCE
PELETLYSEYCLIGCFVSENPIDRFTCECQSCFELAVVVAQTKTTLMLVLRTHRLEVSTD
IDYPLQLGQVYACEIVYIRSKPVCKRLYRA
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
ttgtgttggcgctggcgcacgcgcttgaactcaggagtgtttgctaacttaaaagttcac
tcagtttattcaattctggaaagcgcattaagcctcgaaaaaatcgcagagctaacactt
aaacactcgcaacgtagcgtgtgcttaacagataacaacttacacggtgcgttagagttt
tgtgtaaaatgcagaagcgtgaatgtacagccgattgtggctctcaaggtgctgatcgac
gatcagcacgcgctgtttaacgcgccaacaaaaccttcaatagccacattaatagttcgc
acggagcgcggttacgcaaacttgctgaaattaataaacgctagcgcgcccgagcttgga
catcgcgttataacgttagctcagcttgaagcgcattcggaagggctaacgttgctactc
ggcgaagtgggcggattagcttgagaagtatacaaacaatttgaggctgacgctattaca
gcgcgactcgatctgttgcgccaaattgttaacaacaatctgtgttttgaattacaaagg
cgctcgtttgtaaaccaacagttcgagactacgctaacggagtatgccgaaacgcactcg
ctgttggtagtggccaccaatgagacattctttgaagcgcctcaggactatagcgtgtat
aaagcgctttgcgtagtgtcgcgcacgcagcgctcgagcgtcaccagtcagaattatttt
aaaagttacgccgaaatgttaacgcgtttcgcggatgtgccgcgcgcattaaacaattgt
gggcgactttgcaacgcttgcgagttctatttagagactcggccgctgacactgcccgcg
ttcttaagctcacaaacgcttgaaaacagtgtgttgtacaaacgtttaataatctcgttg
gagcgtttgttttatagcgtgggcaaagtcaacaagcgcgcgtattacaaacgtcttatc
ggagagctgcgcgtagtgtcgcgcacacggtacgcgggttatttccttatggtaatggac
tttgttttatgagctaaaacgaataacatattagtggggccgggtcgcggctcggccgct
ggctctttgctagcgtattgcgccaacattaccaacgtagaccctttgcaatatgggcta
ttatttgaacgatttttaaacgcggcgcgcgctaatccgcccgatattgacgtggacttt
tgccacgtggcgcgcgaagaattaataaggtatgttcaagcgcgatacaccgccgccaac
gttgcccaaatttcaacgttcggcgtgctgcaattaaggggcgctataaaagacgcaggc
agatgtctccaaattaagtttgagacattaaacaacgtgtgcgcagctctgccgatgcat
ccgcgcgttaaagttaccaattcgatgttgctagcgtgttgcgcaaaagcgctaataccg
cagcacactgcaatcgagctaatcgccacagccgaaaagctcgtgggcgtgtacagacac
gtgggcacccatgctgctggcgtggttataagcaattcgccgttagccgatcaagtgcct
gtggtttgagacactcaaaataagattaatgtgacccaatacaatatgggctgagtagac
gctgccggcttaccaaagtttgatttgcttggactcaaaacattaactgttgtggacggc
gtgttagagctgttggcaatcaacagaatcgagccaaacattaactttaaagacgaaaaa
acttacagtttcataagccgagggctgctgttagccacctttcagttagaaagcaagggt
ataaccaaacacgttgagcacatgaaaccatcaagtttaaatgatctggccgcgcttata
gcgttgtatagaccgggacctatacagcaaattaaattgtattccgatataaaacatggt
cgcgccaagcgcgccaaaatacacagcaaaatagacagcgtgctagacgacacatatggc
ataatagtataccaagaacaggtgatgctgatagctcaagcgctatcaggatattcgcta
gttgaagcggacgagttaaggaaggctatggcaaagaaaaacaaatccgaaatgttggct
cacaccaagaggtttgtcgacggcgccgccgcaaacggtgttgataagcaactggcggcg
agcgtgtttgaaactttggttcgctttgcggactatggttttaacaaatcgcacgctgtg
gcttacgccatgctagcgtacacgactgcgtatttaaaatgcaactttacgttagaattc
tatgccgtttgcctcactgtcgaaacaaacgaagcaaatgagattaccgatttgtattac
gaggcgttaaagctcgaagtggagtttgcacagcctagtgtgcaagcgccttataacgag
ttcaaaattattaatagcgttattcagttcccgctgagcgcgattaaaaatgtgccgcaa
acggcgattagcagcatagcggcctctaaaacgaacaaaccgttcactagtttaacagac
ttttgctgtaagtgcgactcaaaactgataactgaaaacgtgctcagatcgctcattctc
ggcggcgcgttcgattgctttcaactgtccagaaccaaaatgatatcaaatttgaagcta
atacaagactgcatcagattcaaaaccgacatcagtctgatcgcgttagattattgcgaa
cctgagctcgaaacgctttatagcgaatactgtcttatcggctgcttcgtttcggaaaac
cccatagacagattcacgtgtgagtgccagagttgttttgaattggcagtagttgtagcc
caaacaaagactacattaatgcttgtgctcagaacacaccgacttgaagtttccaccgat
attgactaccctctgcaattagggcaagtgtacgcttgcgagattgtgtacattcgatct
aaaccagtgtgcaaacgcctctatcgggcttag
DBGET
integrated database retrieval system
