Candidatus Hodgkinia cicadicola TETUND2: HCTETUND2_002
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Entry
HCTETUND2_002 CDS
T03596
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hcd
Candidatus Hodgkinia cicadicola TETUND2
Pathway
hcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCTETUND2_002 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcd03021
]
HCTETUND2_002 (rpoC)
03400 DNA repair and recombination proteins [BR:
hcd03400
]
HCTETUND2_002 (rpoC)
Enzymes [BR:
hcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCTETUND2_002 (rpoC)
Transcription machinery [BR:
hcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCTETUND2_002 (rpoC)
DNA repair and recombination proteins [BR:
hcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCTETUND2_002 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHL30973
LinkDB
All DBs
Position
3708..7652
Genome browser
AA seq
1314 aa
AA seq
DB search
MRNRPNQPASTSAEVSSLSVSLASQEQVLSWSHGEVTNPAGFNLFTGKPEINSLFCSRTF
GPVKDNECLCSAPTFGASACLVCGVEFVPSWCRRKRFGHIELAVPVAHTWFCKSSPNALA
LLLDLSAHTVQMIINYEIYLVVSSEEPKLSAGAFVSDSTFYKLSEAKVRCRFASGASALL
MLLDKVDVWELKQKLCVKLAKTKSKSTAFALRRRLELVNLFVESATDPKLIILNVLPVLP
PGLRPAMLLKDNRYASSDLNELYRQILVKNSAVLAAASGEPRAQARSMRELQQSVDALFD
NSKAVPRALGYNNCALKSLADLLKGKNGRFRQNLLGKRVDYSGRSVIAPGPELNLNECGL
PRVMAMELFKPFLKAKAIMAWNLSSAAEAEALLSAAPESARAFLEEIAQWHPVLLNRAPT
LHKLSFQAFKVRIINSKVIRLHPLVCAGFNADFDGDQMAVHVPLTLEARAEALALMMSTS
NVLHPAHGSPSVLPTQDMILGLYYMSLVSADVSDMCFSSYADVSAALFAGLVKLTAKVRF
SADGGRAVRESTPGRILFNELVPLECGWFYNTSCPPLTKAYVYALIDVVWRKCGVGRMTQ
FCVDIMKLGFKHACASGISIGKSDFPDFSYKRDVLTNVSRTVSDLSENYRVSDRWELWCN
AVELITHGVEVELAQRGDFQTSIQIIANSGARGTRSQIRQLVGLKGFVYGFNGKLCLMPV
LSSYTQGLSAIEFFYTAYGSRRGLIDTALKTASSGYLTRKLVEVARDCTVSKLDCKTVNS
VRFDLKRNAGYIKHNLISRTLAKPIVCGNKTVLSANTIISSHNVAKLLKHGGKSVDLRSP
MTCECVNGVCSFCYGADLSTSELAPLGQAVGIIAAQSIGEPGTQLTLRAFHDTSAAKQRE
RVTRAHILSPCDGVLRLRNLVCVLSAAGDAVVMGKACTLEVERNGVTRYKRKLCRGDRLL
TQDGAIVNTGSLLCLGRGVYSTRMILISGCLRLDGFVEGISSSSDLDVYMGSLTRVALAN
NLVNAEIKVSTRCSTFVYRPISGEQLIAVSATCVNIGDMLTWALLRVRPSAQPHQQLSFA
KLSNLFENRVRARTRALISPFSSRIRVGRTRGNSRVYVLEPLDRRQQAFAFVVKGKPLNV
SNGEFIQRGKTLIPGELDLCNFASRNGLNALTRQFVAQVQDIYDSQGVSISSKHIEIILA
QMTRYAEVSARGDSNFSLGQRALCTSVVKVNNQLVSKGLKLVGARRLLLGVSRICASQQS
LLSAMAYQGSTGLLVRASIARTLFKLPSIKERVMLGALTPVGTGIYRNMVLSCC
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcaacaggcctaatcaaccggcttcaactagcgccgaagtttcgagtttaagcgtg
tcgttggcaagccaggagcaggttctaagttggtcgcatggggaagtgactaatcccgca
ggctttaatttatttactggtaaaccggaaattaatagcttgttttgttctagaacgttt
gggcctgtgaaggataacgagtgtttgtgcagcgcgccaacatttggcgcaagcgcctgt
ttagtgtgtggcgttgagtttgttcccagttggtgtaggcgaaagcgctttggtcacata
gagttagcagtgccagttgcgcacacgtgattttgcaagtcgtctccgaacgcgttagcc
ttattactagatttgtcggcgcatactgtgcagatgataataaattacgagatataccta
gttgttagctccgaagagccgaaacttagcgctggcgcgtttgtgtccgatagcacattt
tacaagctgagtgaagctaaagtgcgctgcagatttgcgtccggcgctagcgcgttgtta
atgttgctagacaaggttgatgtctgagagcttaagcagaagctgtgtgttaagcttgct
aaaactaagtccaagtcaacagcgtttgcgttgcggcgaaggctcgagctggttaacttg
tttgtggagtctgcgaccgatccaaagcttattattttaaacgtattgcctgtgttgccg
ccggggcttaggccagcgatgttgcttaaagataatagatacgccagctcagatttaaat
gagctgtatagacagattttagtaaaaaacagtgccgttttggcggcggctagtggtgaa
ccgcgagcgcaagccaggagtatgcgtgagttgcagcaatcggtggatgcgctgttcgat
aactctaaagctgttccgcgcgctttaggttataataactgtgcgctaaagtcgttggca
gatttgttaaagggcaaaaacggtaggtttagacagaatttgttgggtaagagggtggat
tactccggccgcagtgttatagcgcctgggccggaactaaatctgaatgaatgtggtctg
cctagagtgatggcaatggagttgtttaaaccattcttgaaagccaaggctataatggct
tgaaatctaagcagtgccgccgaagccgaagcgttgttaagcgctgcgccggagagcgcg
cgcgcgtttctagaggagattgcgcaatggcatccagtgttgcttaatagagcgcccaca
ttgcataaactaagttttcaagcgtttaaggttagaataataaactctaaagtaataagg
cttcatccgttggtgtgcgccggattcaacgccgattttgatggtgaccaaatggctgtg
cacgtgccattaaccctagaagctagagccgaggctttggcgttgatgatgtcaactagc
aacgttttgcatccagcgcacggttcgccgtccgttttgccaacccaggacatgatcctg
ggtctgtactacatgtcgttagtttcggccgacgttagcgacatgtgctttagctcctat
gctgatgttagcgcggcgttgtttgcgggcttggttaagctcactgcgaaagttagattt
agtgccgatggcggacgcgctgtgcgagagtcaacacccggtaggatattgtttaatgag
ctagtgccgcttgagtgtgggtgattttataacacatcttgtccgccgcttactaaagct
tatgtttatgcgctaatagacgttgtatggcgcaaatgtggagtgggccgaatgacacaa
ttttgcgtcgatattatgaaattgggttttaaacatgcttgtgcgtccggtatatcgata
ggtaaatcggacttcccggactttagctataaacgcgatgtgttaactaatgtgtctaga
acggttagtgacctcagcgagaattatcgtgttagcgatcgctgagagttatgatgcaac
gcggttgagcttattacccatggtgttgaggttgagctagctcaacgcggtgattttcag
acgtcgatacaaattatagcgaactcgggcgcgcgcggcactcgatctcaaattagacag
cttgtgggcttgaaggggtttgtatacggatttaatggcaagctttgcctaatgccggtt
ctgtcttcttatacgcagggcctgtctgcgattgagttcttttacactgcttacggctcg
agaagggggctaatcgacacggcgcttaaaacagctagctccggttatcttactaggaag
ttggtggaagttgcgcgcgattgcacagtctccaaactcgattgcaaaaccgttaacagc
gtgcgtttcgatttgaagcgcaacgcgggctatataaagcataatttaataagcagaacc
ttagctaaaccgattgtttgtggcaacaagactgttcttagcgccaacacgattatatcc
agccacaatgtggctaagctgttaaaacacggcggcaaaagtgttgatcttaggtcgcct
atgacgtgtgaatgtgttaatggcgtttgttcgttttgttacggcgctgaccttagcact
agcgagttagcgcctttgggccaagcggttggcataatagccgctcagtcgataggtgaa
ccgggcactcagttaacgttgagagcgtttcatgacactagcgcggcaaaacagagagag
cgtgttactcgcgcgcacattttgtcgccatgtgatggcgtgttgcgcttgcgaaattta
gtgtgtgttctcagcgccgccggcgatgctgttgtgatggggaaggcgtgcactctcgag
gtggagcgcaacggcgtaacgcgttacaagcgcaagctttgccgtggagaccggttatta
acacaggacggcgcgatcgttaacactggtagcttgttatgtttaggtcgcggagtgtac
tcaactcggatgattctaatcagcggctgtctaaggctcgatggcttcgttgagggaata
tcttcaagctccgatcttgatgtctacatgggctcgcttacgcgcgttgcgcttgccaac
aatttggttaatgccgaaatcaaagttagcacgcgctgctcaacgtttgtttatcgccct
ataagtggggagcaactaatcgcagtgtcggccacgtgcgtaaacataggcgacatgttg
acttgggcgttgctgcgagtgcgaccgagcgcacagcctcatcagcagttaagttttgcc
aagctttcgaatttattcgagaatagagtgcgtgcgcgaacccgcgcgctaattagtcca
ttcagcagcagaattagagtagggcgaacgcgcggtaacagcagagtgtatgtgctagag
ccgttagatcggcgccagcaagcgttcgcttttgttgttaagggcaagccgcttaacgtt
tcaaatggcgagttcattcaaagaggtaaaacgcttattcccggtgagttagacttgtgc
aactttgcaagccgaaacggtttaaacgctttaactcgtcagttcgttgcgcaagttcag
gatatttatgacagccagggcgttagcattagcagtaagcatatagaaatcatattggcg
caaatgacaaggtacgccgaggtcagcgcgcgcggcgactcaaactttagcttgggtcag
cgcgcgctttgcacatcggttgttaaagttaacaaccagcttgttagcaaaggccttaag
cttgtcggcgcgcgccgtttattgctgggagtttctagaatttgcgcctcgcagcagtct
ttgctatccgctatggcttaccaaggctcaacaggcttgcttgttagagcgagcattgcg
cgcacgctgtttaagctgcctagtataaaagagcgtgttatgttaggcgcactcacgcca
gttggcactggaatttatcgcaatatggttttgtcgtgctgttaa
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integrated database retrieval system
