Helicobacter cetorum MIT 00-7128: HCW_01835
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Entry
HCW_01835 CDS
T02032
Name
(GenBank) ATP/GTP binding protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hce
Helicobacter cetorum MIT 00-7128
Pathway
hce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCW_01835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hce03019
]
HCW_01835
Messenger RNA biogenesis [BR:
hce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HCW_01835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AFI03652
UniProt:
I0EL33
LinkDB
All DBs
Position
complement(376563..378668)
Genome browser
AA seq
701 aa
AA seq
DB search
MQENNEHNNYENNEHSYNHNQPNSNHNEPRVGAFNRFANRKKRFKENAQNKDENNHNQKP
HKKEHANNHNKKERSNNPNHNKPKNAPQKTRNYAKEELDKNKVEGVTEILHVNERGTLGF
HKELKKGVEANNKIQVEHLNPHYKMNLNSKASVKITPLGGLGEIGGNMMVIETPKSAIVI
DVGMSFPKEGLFGVDILIPDFSYLHQIKDKIAGIIITHAHEDHIGATPYLFKELQFPLYG
TPLSLGLIGSKFDEHGLKKYRSYFKIIEKRCPISIGEFIIEWIHITHSIIDSSALAIQTK
AGTIIHTGDFKIDHTPVDNLPTDLYRLAHYGERGVMLLLSDSTNSHKAGTTPSESTIAPT
FDALFKEAQGRVIMSTFSSNIHRVYQAIQYGIKYNRKIAVIGRSMEKNLDIARELGYIHL
PYQSFIEANEVAQYPDNEVLIVTTGSQGETMSALYRMATDEHRHISIKPSDLIIISAKAI
PGNEASVSAVLNFLMKKEAKVAYQEFNNIHVSGHAAQEEQKLMLRLIKPKFFLPVHGEYN
HVARHKQTAIACGVPEKNIYLMEDGDQVEVSPNFIRKVGTIKSGKSYIDNQSSLSIDTNI
VQQREEVASVGAFFATLFINKNKQALLESSQFSSLGLVSFKDEKNLTKEIQGGLEMLLKS
SNAEIFSHPKKLEDCVRNFIRKSLFKKFRKYPAIICHVHAS
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagaataacgagcataacaattatgagaataatgagcactcatacaaccacaat
caacccaattctaatcataacgagcctagagttggggcattcaatcgttttgctaaccgc
aaaaaacgctttaaagaaaatgcgcaaaacaaagatgagaataaccacaatcaaaaaccc
cataaaaaagagcatgcaaacaaccacaataaaaaagaaaggtcaaataaccctaaccac
aacaaacccaaaaatgctccacaaaaaacaagaaattacgctaaagaagagctggataaa
aacaaagtagagggcgtaacagagattttacatgtgaatgagagaggaactttaggcttt
cataaagaactaaaaaaaggcgttgaggctaataataaaattcaagtggaacacttaaat
ccgcattataagatgaatttaaactctaaagcaagcgttaaaatcacgcctttggggggc
ttgggcgaaattgggggcaatatgatggtcattgaaaccccaaaaagtgctattgtgatt
gatgtgggcatgagctttcctaaagaagggctatttggcgtggatattttaatcccagat
ttttcttatctgcaccaaatcaaggacaaaatcgctggtattatcatcacccatgcccat
gaagaccacataggagcaacgccttatttattcaaagaattgcaattccccctttatggc
acacccctaagtttaggtcttattggaagcaagtttgatgaacatggcttgaaaaaatac
cgctcgtattttaaaatcattgaaaaacgctgtcctattagcattggcgaatttattatt
gaatggattcatatcacgcactctatcattgatagtagtgcgttagccattcaaactaaa
gcaggcacgattattcataccggcgattttaagattgaccacactcctgtagataactta
cccactgatttgtatcgcctagctcattatggtgaaaggggggtcatgcttttattaagc
gattctaccaactctcataaagctggcaccaccccaagtgaaagcaccatagcccctacc
tttgacgccctttttaaagaagcacaaggaagagtgattatgagcactttctctagcaat
atccatagggtgtatcaagccatacaatatggcattaaatacaaccgaaaaatcgccgta
atcggtcgctccatggaaaaaaacctagacattgctagagagctaggctatatccatttg
ccctatcagtccttcattgaggctaatgaagtggcgcaataccctgataatgaagtttta
atcgtaaccaccggttcacaaggcgaaaccatgagcgctttatatcgcatggctactgat
gagcatcgccatatttctatcaaaccaagcgatttaatcattatttcagctaaagccatt
ccgggtaatgaggcaagtgtttcagcggtgttgaatttcttaatgaaaaaagaggccaaa
gtggcttaccaagagtttaataatatccatgtaagcgggcatgccgctcaagaagaacaa
aagcttatgctaagacttattaagcccaagtttttcttgcctgtgcatggggagtataac
catgtcgcacgccacaaacaaaccgctatagcttgcggagtgcctgaaaaaaatatctat
ttaatggaagatggcgaccaagtagaagtaagccctaatttcattagaaaagtcggcacc
attaagagtgggaaaagctatattgacaatcaaagtagcctaagcattgacactaatatc
gtgcaacaaagagaagaagtcgctagtgtaggggcgttttttgccacgctttttatcaat
aaaaacaaacaagcccttttggaaagctctcaattttctagcctaggacttgtaagcttt
aaagatgaaaagaatttgactaaagaaattcaagggggcttagaaatgctattaaaatct
agtaatgctgaaatctttagccaccctaagaaattagaagattgtgtgcgtaatttcatt
agaaaatcgttgtttaagaagtttagaaaatatccagccattatttgtcatgtccacgca
tcttaa
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