Helicobacter cetorum MIT 00-7128: HCW_02200
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Entry
HCW_02200 CDS
T02032
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hce
Helicobacter cetorum MIT 00-7128
Pathway
hce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCW_02200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hce03019
]
HCW_02200
03016 Transfer RNA biogenesis [BR:
hce03016
]
HCW_02200
Enzymes [BR:
hce01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HCW_02200
Messenger RNA biogenesis [BR:
hce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HCW_02200
Transfer RNA biogenesis [BR:
hce03016
]
Prokaryotic type
tRNA degradation factors
HCW_02200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AFI03723
UniProt:
I0ELA4
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Position
448425..450356
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AA seq
643 aa
AA seq
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MQRFLTHLFTGVKEVPKKFSYLLEDSIFKEVIENKNNHVVLKQGFDIGKIELNKQRQAFL
ISLGIHYAKDPILKGFPKNIAPNALVLCSINPRRKRPIARYIATLSIKTHSIVCYLTKMN
QKIVALSFKDPTKTPIFLKHSQKSLLELPKHCVIKINLKERKIEEILGVLEDPLIDERLS
LELFQRQLTFSKDALDLAQNFSQMPAQSFMGYQDYTHMPFCTIDPITAKDFDDAIFYDKD
LETLYVAIADVSAFVPLHSVLDTESRARGFSVYFPNSVYPMLPPSLSQGACSLKAQEKRL
ALVWEIPLKDIKNAKLVQAMIEVRANTSYEEIEEFFNNPTTCNISKEIQESLLGFLPLAL
ELKKVRLKKGFDFISDKRMLCLDKEGRLENLALDKEGIAHSVVEEAMLLANQSSARLLDE
ALGGKGIYRVHEKPTLEQQKRLNAKLFSYGFERNKKMSFHHFLHHVLELAKEKGLENEVG
HMMIKAQQEARYSPFNEGHFGLGFSSYTHFTSPIRRYSDLMLHRILKELLFGNAKKLAYL
LEETIIVCSELNALQKNVALIERDFRKRKFARYALEHINEEFLGIVLENKDFIVVSLKEK
LIGAKVLVKSKHSFEILEKVRLKITQADLILGEIRGEIIQKGL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgctttttaacgcatttatttaccggagttaaggaagtccctaaaaaattttct
tatcttttagaagatagtatttttaaagaggtcatagaaaataaaaacaatcatgttgtt
ttaaaacaaggttttgatattggtaaaattgaattaaataaacaacgccaagcttttttg
atttcgctaggcattcattatgctaaagaccctattttaaaaggttttcctaaaaatatc
gcccccaatgcgcttgtattatgttctattaatcctaggcgtaaacgccctatagcacgc
tacatagccactctttctattaagacgcattctatagtgtgttatttaactaaaatgaat
caaaaaattgttgcccttagttttaaagacccgacaaaaacccccatttttttaaagcat
agtcaaaagtccttattagaattgcccaagcattgtgtgataaaaatcaatcttaaagag
cgtaagattgaagaaattctaggggttttagaagacccattaattgatgagcgtttgtct
ttagaattgtttcaaaggcaactcactttttctaaagacgccctagatttagcacaaaat
ttttctcaaatgcccgcacaaagttttatgggttatcaagattatacgcacatgcctttt
tgcaccattgacccaataacagccaaagattttgatgatgccatcttttatgataaagat
ttagaaacgctttatgtagccattgccgatgtgagtgcgtttgtgcctttacattcagtg
cttgatacagaatcaagggctaggggttttagtgtgtattttcctaatagtgtctatcct
atgctcccacctagtcttagtcaaggggcatgttcattaaaagcacaagaaaaacgcctt
gctttagtgtgggaaatccctttaaaagatataaaaaatgccaagctagttcaagctatg
attgaagtaagggctaatacaagctatgaagaaatagaagaattttttaataaccctaca
acttgtaatatctctaaagaaattcaagaaagccttttagggtttttgcccctagcttta
gaattaaaaaaagtgcgtttgaaaaagggctttgattttattagtgataaaagaatgctt
tgtttggataaagaggggcgtttagaaaatctagccttagacaaagagggcatagcccat
agtgttgtagaagaggctatgctattagctaatcaatctagtgcaagacttttagatgag
gctttagggggtaaggggatttatcgtgtgcatgaaaaacccactttagagcaacaaaaa
cgccttaatgctaaactttttagctatggctttgagcgcaataaaaaaatgtctttccat
cattttttacaccatgttttagagcttgcaaaagaaaagggcttagaaaatgaagtgggg
catatgatgattaaagcccagcaagaggcacgctatagcccttttaatgaggggcatttt
ggcttaggcttttctagttatacgcatttcacttcgcctattaggcgttatagtgatttg
atgttgcataggattttaaaagagctattatttgggaatgctaaaaaacttgcttacttg
cttgaagaaacaataatagtatgctctgaattaaacgctttgcaaaaaaatgttgccttg
attgaaagagattttagaaagcgtaaattcgctcgctatgctttagagcatattaatgaa
gaatttttaggtattgtgctagagaataaagattttattgttgtaagtttaaaagaaaag
cttattggcgctaaggttttagtaaaatctaagcactcttttgagatattagagaaagtg
cgccttaaaatcactcaagctgatttaattttaggtgaaattagaggcgagattatacaa
aaagggctttga
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