Helicobacter cetorum MIT 00-7128: HCW_02360
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Entry
HCW_02360 CDS
T02032
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hce
Helicobacter cetorum MIT 00-7128
Pathway
hce02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hce00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HCW_02360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hce03021
]
HCW_02360
Transcription machinery [BR:
hce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HCW_02360
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
HTH_25
WYL_3
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AFI03753
UniProt:
I0ELD4
LinkDB
All DBs
Position
485050..487002
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AA seq
650 aa
AA seq
DB search
MKKKANEEKTPKKATQEIPETKSKETKLVKKPSAKKLSFNEELEELFASSLNNCISYESI
VQLCAKVPTLAQVKKIKELSQKYKKELVSSSEYAKKLNAIDKIKNTQEKQKVLEEELEDG
YDFLKEKEFLEWSRSDSPVRMYLREMGQIVLLDKEEEVELSKQIRLGEDIILDAICSVPY
LIDFIYAYKDALINRERRVKELFRNFDDDDDSSSSDSKKEEEIDDEEEGEEGKKVVSEKD
KKRVEKVLESFKALDKAKKEWLKALDEPRDENEDELVYLLTLAYKRQMLKDRLYDLGPTS
KLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDALVENHKKILANITNMTKEDITNQ
VPEATMVSVYMELKKLFQTKEASEEGFDLDPNKLKEILEQIKRGKLISDRAKNKMAKSNL
RLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEYEKGFKFSTYATWWIKQAISRAIA
DQARTIRIPIHMIDTINRINKVMRKHMQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEP
ISLEAPVGNDDDGKFGDFVEDKNVISSMDHIMREDLKAQIDGVLDQLNEREKAVIRMRFG
LLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLRI
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaaagctaacgaagaaaaaacccccaaaaaagctacacaagaaattccagaa
accaagtctaaagaaaccaagcttgtaaaaaaacctagcgctaaaaaacttagctttaat
gaagaattagaagaattatttgcaagctctttaaataattgcatttcttatgaatctatt
gtccagctttgtgcgaaagttcctactttggctcaagttaaaaagattaaagagctatcc
caaaaatacaaaaaagaattggtaagctcttcagaatatgccaaaaagcttaatgcgata
gataaaatcaaaaacacacaagaaaagcaaaaggtcttagaagaagaattagaagatggc
tatgactttttgaaagaaaaagagtttttagaatggtctaggagtgatagtccggtgcgt
atgtatttgcgtgaaatgggacaaattgtgcttttagacaaagaagaagaggtggaatta
agcaagcaaatccgcttaggtgaggacattatccttgatgcgatttgttctgtgccgtat
ttaattgatttcatctatgcgtataaagatgctttaatcaatcgtgaaagaagagtcaaa
gagctttttagaaactttgatgatgatgacgacagctcaagttctgattctaagaaagaa
gaagaaatagatgatgaagaagagggcgaagagggcaaaaaagtcgtttctgaaaaagac
aaaaagcgtgtagaaaaagtcttagaaagctttaaagctttagataaagctaaaaaagaa
tggctaaaagcattagatgaacctagagatgaaaatgaagatgaattagtttatttgcta
actttagcttataagcgtcaaatgcttaaagatagactttatgatttagggcctacaagt
aagcttatcaacgaattagtaaaaactatggagaccactttaaaaagtggcgatggtttt
gaaaaggaattaaaacgcttagaatataagctccctttattcaatgatgcgttagttgaa
aaccataaaaaaatccttgcaaatatcaccaacatgactaaagaggatattactaatcaa
gtcccagaggctactatggttagtgtgtatatggaattaaaaaagcttttccaaactaaa
gaggcaagcgaagagggctttgacttagaccctaacaaattaaaagagattttagaacaa
atcaaaagaggcaagttaatttctgatagagctaagaataaaatggctaaatctaactta
aggcttgttgtaagtattgctaaacgctttacaagtaggggtctgcctttcttagattta
atccaagagggtaatattggcttgatgaaagcagtagataagtttgagtatgaaaaaggc
tttaaattttctacttatgcgacttggtggattaaacaggctattagtagagctatagct
gaccaagcccgcactattagaatccccattcatatgatagatactattaatcgcattaat
aaggttatgcgaaagcatatgcaagaaaatggtaaagagccggatttagaagtggtggct
gaagaagtagggctttcattagataaagttaaaaatgtgattaaagttactaaagagcct
attagcttagaagctcctgtgggtaatgatgatgatggtaagtttggggattttgtagaa
gataaaaatgtcataagctctatggaccatattatgagagaagatttaaaggctcaaatt
gatggggttttagaccaattgaatgaacgagaaaaggcggtgattcgcatgcgttttggt
cttttagatgatgaaagcgatagaaccttagaagaaattggcaaagaattgaatgttaca
agagagagagtgcgccaaattgaaagctctgctattaaaaagcttagaagtccgcaatat
gggcgtattctaagaaattatctacgcatttga
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