Helicobacter cetorum MIT 00-7128: HCW_03225
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Entry
HCW_03225 CDS
T02032
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hce
Helicobacter cetorum MIT 00-7128
Pathway
hce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCW_03225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hce03019
]
HCW_03225
03016 Transfer RNA biogenesis [BR:
hce03016
]
HCW_03225
Enzymes [BR:
hce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HCW_03225
Messenger RNA biogenesis [BR:
hce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HCW_03225
Transfer RNA biogenesis [BR:
hce03016
]
Prokaryotic type
tRNA degradation factors
HCW_03225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
S1_RRP5
S1_2
WH_MCM3_C
Motif
Other DBs
NCBI-ProteinID:
AFI03926
UniProt:
I0ELV7
LinkDB
All DBs
Position
682318..684396
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AA seq
692 aa
AA seq
DB search
MDFITINSANKSEEFALKQVAKQANSSVLYRLGKTLILASVCVEQEPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRPGDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDTEN
DLQVSALNAASSALYLANIAPIKSVTACRIARIKENEEEKFVINPSMSVLEKSSLDLFVS
GTKESLAMIEMRSLGQELNALEEPLMLEALELAQMSLKETCTLYEETFTPLQNAPFFKES
VLACVNERLLELLKSQYFDEIILGIQSSALSERESAFKNIAKHVSEAHSEFSYEEIELAL
EKLKKAEIRRMILKDRVRADKRALDEVRPISIESNLLPMAHSSILFTRGQTQSLVVGILG
TDNDAQSHENLEHKAPYKERFMFHYNFPPFSVGEASPIGATSRRELGHGNLAKRALETSI
KNKEQVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGVVQEGDEYAIL
SDISGLEDAQGDMDFKIAGSLKGITAMQMDTKLNGVKLEILNAALLQAKKAREHILNIMQ
EAQKQIVINFANLPATEIFSVAPDKIVEIIGQGGRTIRDIVERFEVKIDLNKPSGEVKIM
GNKERILEAKEFILALLRKSCQELEQYQLDEILEAQVKKIVDFGAFLSLPKGGEGLLRKQ
IIEKCGVTLNEGDKVRCRISSFNKGKIGLDLA
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggactttataacaattaattcagccaataaaagcgaagaatttgctctcaaacaagtt
gccaagcaagctaatagctcagtattgtatcgtttaggaaaaacactcattttagcgagt
gtgtgcgtagaacaagagccagtaagcgaagattttttgcctttagtggtgcaattttta
gaaaaatcttatgctgcaggcaagattcccggaggctttgtcaaaagagagggcagaccc
ggcgattttgagattttaacctctcgtttgattgataggactttacgccctttattccct
aaagattatcgctatcccacacaaatcaccttaatggttttaagccatgacacagaaaat
gatttgcaagtttcagcgcttaatgctgcctctagtgcgttatatctagccaatatcgct
cctattaaaagtgtaacagcttgtaggattgcacgaattaaagaaaatgaagaagaaaaa
tttgtgattaatcctagtatgagtgttttagaaaaatctagcctagatttatttgtttca
ggcactaaagaaagtttggcaatgattgaaatgcgctctttagggcaagagctaaacgct
ttagaagaacctttaatgctagaagctttagaattagcccagatgagcttgaaagaaact
tgcacgctttatgaagagacttttacgcccttgcaaaatgccccattttttaaagagagc
gtgttagcttgcgtgaatgagcgcttattagaattgcttaaaagccaatattttgatgaa
attatcttaggtattcaaagttcagctttaagtgaaagagagagtgcttttaaaaatatt
gctaaacatgtgagtgaggcgcattcagaatttagttatgaagaaattgaactggcttta
gaaaagctcaaaaaagctgaaattaggcgcatgattttaaaagatagagtgcgagctgat
aagcgtgccttagatgaggtgcgccctatttctatagaaagcaatctattgcctatggcg
catagctctattctttttactagaggacagactcaaagtttggttgtaggaatcttaggc
acagataatgacgctcaaagccatgaaaatttagaacataaagccccctataaagaacgc
tttatgttccattataattttccgcctttttctgtaggcgaggcaagccctattggtgcg
acttcaaggcgtgaattagggcatgggaatttggctaaaagggcgcttgaaacaagcatt
aaaaacaaagagcaagtcattcgcttagtttctgaaatcttagaaagcaatggttcaagc
tcaatggcaagcgtgtgtgcaggctctttagcgctctatgcaagtggggtagagatttat
gacttggtagctggagttgctatgggtgtggtgcaagagggcgatgaatatgcgattttg
agtgatattagtggcttagaagacgctcaaggggatatggattttaaaattgcaggtagt
cttaaaggcattacagctatgcaaatggatactaagcttaatggcgttaagcttgagatt
ttaaacgccgcacttttgcaagctaaaaaagcacgagagcatatcctaaacatcatgcaa
gaggctcaaaaacagattgttatcaactttgctaatttacccgctacagagatttttagc
gttgcgcccgataagattgtagaaattattggtcaaggggggcgcacgattagagatatt
gtagagcgctttgaagttaagattgatttgaataagcctagtggcgaagtgaaaattatg
ggtaataaagagcgcattttagaggctaaagaatttattctagctcttttgcgtaaatct
tgccaagaattagagcaataccagctagatgaaatcttagaggcacaagtcaaaaaaatt
gtagattttggagcgtttctaagcttaccaaaagggggcgagggcttgttgcgtaagcaa
atcatagaaaaatgtggcgtaacgcttaatgagggcgataaagtgcgttgcagaatttct
agctttaataaaggaaagattggcttagacttagcctaa
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