Helicobacter cetorum MIT 00-7128: HCW_04175
Help
Entry
HCW_04175 CDS
T02032
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hce
Helicobacter cetorum MIT 00-7128
Pathway
hce03410
Base excision repair
hce03430
Mismatch repair
hce03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HCW_04175
03430 Mismatch repair
HCW_04175
03440 Homologous recombination
HCW_04175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hce03400
]
HCW_04175
DNA repair and recombination proteins [BR:
hce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HCW_04175
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HCW_04175
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCW_04175
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFI04104
UniProt:
I0EMD5
LinkDB
All DBs
Position
892976..894526
Genome browser
AA seq
516 aa
AA seq
DB search
MKQKLRTQIKEQVESIAYDKGFPSPFLFKDLKKGASKIIEAMQTNTEILVVGDYDVDGVV
STAIMAKFFEALGYKHARFIIPNRFVDGYGISKAFLQKHSAPIIITVDNGISAFEASDYC
NELGYTLIITDHHCLHDNEVPNAYAVINPQQETCNFPQKEVCGALVAFYLCYGIHKLLNQ
QKNKTSELLCLAGVATIADMMPLTFFNRFLVSKTLYFLQQQPIGSMGFLREREVFRKRSL
KASDISFNIAPLLNSAGRMQDPKLALDFLNAKEEDQRQAFYQQLKACNLERKAIQQQVFE
EALECALRGEKVTIAFKESWHEGVLGIVASRLVEATQKPSLVLGLKNGVFKGSGRSFQGL
DLIQALSSVAHLLLGYGGHRKACGLSLEQEKITQVFEALEKHAWQTESVCAITIEPLRLQ
LKDIDEELLEILEYGEPYGQENPEPLFIIRDVEVIEERIIKETHQTMRLRDNENIRGAIY
FCAERFVKVGERISALFSVELDEYTNEPKIFIKSLL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcttaggactcaaattaaagagcaagtggagtctattgcctatgataaa
ggctttccctcgccctttttattcaaagatttaaaaaagggtgcctctaaaattatagag
gctatgcaaactaacactgaaattttagtcgtgggggattatgatgtagatggtgtggtt
agcacagcgattatggcaaaattttttgaggctttaggttataagcatgctcgttttatt
attcctaatcgctttgttgatggctatggtatttctaaggcttttttgcaaaagcattca
gcacctataatcatcaccgtggataatggtatttcggcatttgaggcgagcgattattgc
aatgaattaggttatacgcttattattacagaccatcattgtttgcatgataatgaagtg
cctaacgcttatgcagtgattaaccctcagcaagagacatgcaattttccgcaaaaagaa
gtttgtggagcgttggtggcattctatttgtgttatgggattcacaaacttttaaaccaa
caaaagaataaaacaagcgaactcttatgtttagccggagtggctacgattgctgatatg
atgcctttgaccttttttaatcgctttttagtctctaagacattatattttttgcaacaa
caaccaataggctctatggggtttttgcgagaaagagaagtttttagaaagcgctcttta
aaagcgagtgatatttcttttaatatcgctcctttactcaattctgcaggacgcatgcaa
gaccccaagctcgccttagattttttaaacgctaaagaagaagaccaacgacaagctttt
tatcagcaactaaaagcatgcaatttagagcgaaaggctattcagcaacaagtttttgaa
gaggctttagaatgtgctttaaggggagagaaggttacgattgcttttaaagagagttgg
catgagggggttttagggattgtagcctctcgtttagtggaggccactcaaaagccaagc
cttgtattagggcttaaaaatggggtttttaaaggtagtgggcgtagttttcaagggctt
gatttaattcaagcattaagcagtgtggcacatctcttgctaggttatggggggcataga
aaagcttgtggacttagtttagaacaagagaaaatcacacaagtttttgaggcgttagaa
aagcacgcatggcaaacagaaagcgtttgtgctattactatagagcctttaagattgcaa
ctcaaagatattgatgaagaattgttggaaattttagaatatggcgagccttatggacaa
gaaaatcctgagcctttgtttatcattagagatgtagaggttatagaggagcgcataata
aaagaaacgcatcaaactatgcgcttaagagataatgagaatattaggggggcgatttat
ttttgcgcagagcgctttgtaaaggtgggcgaaagaataagtgcgctttttagcgtggaa
ttagatgaatacactaacgagcctaaaatatttattaaaagtctattatag
DBGET
integrated database retrieval system
