Helicobacter cetorum MIT 00-7128: HCW_06670
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Entry
HCW_06670 CDS
T02032
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hce
Helicobacter cetorum MIT 00-7128
Pathway
hce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hce00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCW_06670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hce03019
]
HCW_06670
03009 Ribosome biogenesis [BR:
hce03009
]
HCW_06670
Enzymes [BR:
hce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HCW_06670
Messenger RNA biogenesis [BR:
hce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HCW_06670
Ribosome biogenesis [BR:
hce03009
]
Prokaryotic type
rRNA helicases
HCW_06670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFI04592
UniProt:
I0ENS3
LinkDB
All DBs
Position
1430739..1432280
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AA seq
513 aa
AA seq
DB search
MTHNTNTTKHTQDYSKETELFDELPTELDDDNDNNKKPSFNDLGLKAQVLKSIQEAGFTS
PSPIQEKAIPAVLQGRDVVAQAQTGTGKTAAFALPIINNLKNNHTIEALIITPTRELAMQ
ISDEIFKLGKHTRTKTVCVYGGQSIKRQCEFIEKNPQVMIATPGRLLDHLKNERISRFVP
RVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEPIKKLADKILENPIKIHI
APSNITNTDISQRFYVINEHERSEAIMRLLDTQSLAKSIIFTRTKKEANELNQILNAKNY
KCTALHGDMEQRERRASIMAFKKNEVDVLVATDVASRGLDISDVSHVFNYHLPLNTESYI
HRIGRTGRAGKKGVAITLVTPLEYKELLRMQKDIGSKIELFEIPSMDENQIVKTLQNAKV
SEGIVSLYEQLKEEFEPSQLILKLLSLQFETNKIGLNQQELHAIQNPKESRERKENKQHN
KHRSKGHSPKRGYSKDKHHKKSNRNHSKNHRRP
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgacacataacactaatacaactaagcacactcaagactattccaaagaaactgagttg
tttgatgagctccccaccgaattagatgatgacaacgacaataacaaaaaaccaagtttt
aatgatttaggcttaaaagcccaagtattaaaatcaattcaagaggcaggttttacttct
ccaagtcccattcaagaaaaggccattccagctgtcttgcaaggtagagatgtagttgca
caagcccaaaccggcacgggaaaaaccgctgcttttgctctccccatcatcaataacctt
aaaaacaatcacaccatagaggccttaatcatcacacctactagagaactagctatgcaa
attagtgatgagatttttaaattaggcaagcacactcgcaccaaaaccgtgtgcgtctat
ggcggtcaaagcattaaaagacaatgcgaatttattgaaaaaaaccctcaagtgatgatt
gcaacccccggaagattattagaccatttaaaaaatgagcgcatttcacgctttgtgcca
agagtggttgtcttagatgaaagcgatgaaatgctagatatgggctttttagatgatatt
gaagaaatttttgactatcttcccagcgaggctcaaattttgctcttttcagctactatg
ccagagccgattaaaaaactcgctgataagattttagaaaatcctattaaaatccatatt
gccccctcaaatatcactaacacagatatttcgcaacgcttttatgtgattaatgagcat
gagagatctgaggctatcatgcgccttttagacacgcaatctctagctaaaagcattatt
ttcacacgcaccaaaaaagaggctaatgaactcaatcaaatccttaatgccaaaaattat
aaatgcaccgctttacatggggatatggagcaaagagaacgccgagcctctattatggca
ttcaaaaagaatgaagtagatgttttagtggccactgatgtagcaagtcgtgggttagat
attagtgatgtaagccatgtgtttaactaccatttgccccttaatactgaaagctatatc
catcgcattggaagaaccggaagagcagggaaaaagggggttgctatcactctagtaacc
cccctagagtataaagagcttttacgcatgcaaaaagatattggctcaaaaattgagctt
tttgaaatcccctcaatggacgaaaaccagattgtcaaaaccttgcaaaacgctaaagtt
tctgaaggaattgtaagcctttatgagcaacttaaagaagagtttgaaccctctcaactc
attttaaagcttttaagcttacaatttgaaactaacaaaattgggcttaaccaacaagaa
ctccatgccattcaaaatcctaaagaatcaagagagagaaaagaaaataaacagcataat
aagcaccgctctaaagggcatagcccaaaaagaggctattctaaggataagcaccataaa
aagtctaatcgtaaccactctaaaaaccataggcgcccctag
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