Hymenobacter cellulosivorans: MUN80_01905
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Entry
MUN80_01905 CDS
T09419
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hcf
Hymenobacter cellulosivorans
Pathway
hcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUN80_01905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcf03400
]
MUN80_01905 (mfd)
Enzymes [BR:
hcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUN80_01905 (mfd)
DNA repair and recombination proteins [BR:
hcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUN80_01905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
UOQ53523
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All DBs
Position
432660..436193
Genome browser
AA seq
1177 aa
AA seq
DB search
MKVSDFLQLYSLDPTVLTVGARLNPATANSVRAKAAQTEASTARIHLRGLVGSQDAVLAA
ALHQEFPDQHHLFILHDREEAAYFLADLQHLLPEEEPLLFPSSYKRPYAFDETENANVLM
RAEVLNKLNSHRGPKTKAEQASEDADDALPEGAEKSKKGKKISVKDTAGALIVSYPEALF
EKVINKKSLVANTFIVKVGDKLDVNFISDMLAEYDFERSDFVYEAGQFAVRGGIVDIFSY
ANELPYRIELFGDEVETIRTFDPESQLSVEKRQQVSIIPNVQTKLLQETREAFLDFIPRN
TAIWAKDVRQTLDIVEESFDRAEAGFKEMLASAGGVQIVSKPEDLFESGKTFKKLLENFP
IVEFGKRFHFKAGSEEFTFSAKPQPSFNKDFSRLVKNLHDNQEKGFTNVIAAESVRQADR
LRTIFDELDNNVQFQHLLLGLREGFVDDTLKLVVYTDHQLFERFYRAQEGRKFSKKKALT
LKELRTLVPGDYVVHQDYGIARFAGLTQVEINDRLQEAIRLVYRDDDVLTVSIHALHKIA
KYSGAEGTPPTMSKLGSPEWENKKKSVKKKVKDIAAELIRLYAKRKTAPGHAFARDSFMQ
AELESSFIYEDTPDQAKATEDVKHDMEQPHPMDRLVCGDVGFGKTEVAIRAAFKSVADGK
QAAVLVPTTILAMQHYKTFRERLANLPVTVEYVNRFKSTKQIKETLARVAEGKTDILIGT
HRLTNKDIKFKDLGLLIIDEEQKFGVKTKDKLKELKVNVDTLTLSATPIPRTLHFSLMGA
RDLSVIATPPPNRQPVQTELHVFDELLVRDAVARELKRGGQVFFVHNRVKDIDELANMIL
RLVPDARVTTIHGQMEGDQLEKRMMKFVDGEYDVLVSTNLIESGLDIPNANTIIINRAHM
HGLSDLHQMRGRVGRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEFSDLGDGFKVAMRDL
DIRGAGNLLGGEQSGFINDLGFETYHQILDEAVQELKETEFRDLFLGDPTQRLQEAAATK
GPKECNIETDLQILIPDHYVSNVSERLQLYSKLDRVKGPEELRKLVAGIVDRFGPLPAEV
EQLADIVRLRWQACQVGFEKLTLKKNLLKGYIPATNNEAYFQGETFGTILNYIQTHPRSA
SMKERKEQLIISIEEVKSVGAAKRILSELGSEEKVGV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggtttccgacttcctccagctttactccctcgaccccaccgtgctgaccgtggga
gcccgcctgaacccggccaccgccaactccgtgcgagccaaagcggcccagaccgaggcc
agcacggcccgcatccacctgcgcggcctcgtgggctcccaggacgccgtattagctgcg
gccctgcaccaggagtttcccgaccagcatcacctgtttatcctgcacgaccgggaagag
gcggcctatttcctggccgacctccagcacctgctgcccgaggaggagcccctgctgttt
ccgagctcttacaagcgcccctacgccttcgacgagacggaaaacgccaacgtgctgatg
cgggccgaggtgctcaacaaactcaactcccaccgcggacccaaaaccaaagccgaacag
gcctccgaggatgccgacgacgccctgcccgaaggcgccgaaaagagcaagaaaggcaag
aaaatcagcgtgaaggacacggccggggccctgattgtgtcttaccccgaagccttattc
gagaaggttatcaacaagaaaagcttagttgccaacacctttattgtgaaggtcggcgac
aagctcgacgtgaactttatcagcgacatgctggctgagtacgacttcgagcggagcgac
ttcgtgtacgaggccggccagtttgccgtgcgcggcggtatcgtggatatcttcagctac
gccaacgagctgccctaccgcatcgagctgttcggcgacgaggtggaaaccattcggacc
ttcgaccccgaaagccagctgtcggtggaaaagcggcagcaggtgagcatcatccctaac
gtgcaaaccaagctgctacaggaaactcgggaggcctttctggacttcattccccgcaac
accgccatctgggccaaggacgtgcgccagaccctggacatcgtggaggaatccttcgac
cgggccgaggcgggcttcaaggaaatgctggcctcggccgggggcgtgcagattgtgagc
aagcccgaggacttgttcgagtcgggcaagacgtttaagaagctgctggaaaactttccc
atcgtggagttcggcaaacgcttccacttcaaggccggctccgaggaatttacctttagc
gccaagccccagccttccttcaacaaggacttcagccgcctggtcaagaacctgcacgac
aaccaggaaaagggctttaccaacgtcattgccgccgaatccgttaggcaggccgaccgg
ctgcgcaccatcttcgacgagctggataacaacgtgcagtttcagcacctgctgctaggc
ttgcgcgaggggttcgtggacgacacgctcaagctcgtggtgtataccgaccaccagctg
ttcgagcggttctaccgggctcaggaaggccggaagttctccaagaaaaaggccttgacc
ctaaaggagctgcgcaccctggtgcccggcgactacgtggtgcaccaggactacggcatt
gcccgcttcgccggcctgacccaggttgaaatcaacgaccggctgcaggaagccatccgc
ttggtgtaccgcgacgacgacgtgctgaccgtcagcatccacgccctgcacaagattgcc
aagtactccggggccgagggcacgccgccgacgatgagcaagctgggctcgccggagtgg
gaaaacaagaagaagtcggttaagaaaaaggtcaaggacattgccgccgagctgatccgc
ctctacgccaagcgcaaaaccgcccccggccacgccttcgcccgcgactcctttatgcag
gccgagctggaatcgagcttcatctacgaagacacgcccgaccaggccaaggccaccgag
gacgtgaagcacgacatggagcagccccaccccatggaccgcctggtgtgcggcgacgtg
ggcttcggcaaaaccgaggtagccatccgggccgcgtttaagtcggtggccgatggcaag
caggcggccgtgctggtgcccaccaccatcctggccatgcagcactacaaaaccttccgc
gagcggctcgccaatctgcccgtgacggtggagtacgtgaaccgcttcaagagcaccaag
caaatcaaggagaccctggcccgggtggccgagggcaaaaccgacatcctcatcggcacc
caccgcctcaccaacaaggacatcaagttcaaggacctgggcctgctcatcatcgacgaa
gagcagaagtttggggtcaagaccaaggacaagctcaaggagctgaaggtgaacgtggac
acgctgactctctcggccacgcccattccgcgcaccctgcacttctccctgatgggcgcc
cgcgacctgtcggtcattgccacgcccccaccgaaccgccagccggtgcagaccgagctg
cacgtcttcgatgagctgctggtgcgcgacgccgtggcccgcgaattgaagcgcggcgga
caggtattcttcgtgcacaaccgcgtgaaggacatcgacgagctggccaacatgattctg
cgcctcgtgcccgatgcccgcgtgaccaccatccacggccagatggaaggcgaccagctc
gaaaagcgcatgatgaagttcgtcgacggcgagtacgacgtgctggtgagcaccaacctg
attgagtcgggcctcgacattcccaacgccaacaccatcatcatcaaccgggcccacatg
cacggcctctccgacctgcaccagatgcggggccgcgtgggccgctccaacaaaaaggcc
tactgctacctgctcaccccgcccgtggccggcctgcccagtgatgcccgcaagcgcctg
agcaccctggaggaattctccgacctcggcgacggattcaaggtggccatgcgcgacctc
gacatccggggcgcgggcaacctgctgggcggcgagcagtcaggctttatcaacgacctg
ggcttcgaaacctaccaccagattctggacgaggccgtgcaggagctcaaggaaaccgag
ttccgcgacctgttcctcggcgaccccacccagcgcctgcaggaagccgccgccaccaag
ggccccaaggagtgcaacatcgaaaccgacctgcaaatcctcatccccgaccactacgtg
agcaacgtctcggagcgcctgcagctctatagcaagctcgaccgggtgaaaggccccgag
gagctgcgcaagctcgtggccggcatcgtggaccgcttcggccccctgcccgccgaagtg
gagcagctagccgacatcgtgcgcctgcgctggcaggcctgccaggtgggcttcgaaaag
ctcaccctcaagaagaacctgctcaaaggctacatcccggccaccaacaacgaggcctac
ttccagggcgaaaccttcggcaccattcttaactacattcagacccacccccgctccgcc
tccatgaaggagcgcaaggaacagctcatcatcagcattgaagaggtgaaaagcgtgggt
gccgccaagcggattctgagtgagttagggagtgaggagaaggtgggagtgtaa
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