Hymenobacter cellulosivorans: MUN80_12885
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Entry
MUN80_12885 CDS
T09419
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hcf
Hymenobacter cellulosivorans
Pathway
hcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUN80_12885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcf03019
]
MUN80_12885
03400 DNA repair and recombination proteins [BR:
hcf03400
]
MUN80_12885
Enzymes [BR:
hcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUN80_12885
Messenger RNA biogenesis [BR:
hcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MUN80_12885
DNA repair and recombination proteins [BR:
hcf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MUN80_12885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
FeoC
Motif
Other DBs
NCBI-ProteinID:
UOQ55623
LinkDB
All DBs
Position
3027453..3029375
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AA seq
640 aa
AA seq
DB search
MSQLPTDDILLVLRQTWGHSAFRPMQEDIIRSVLAGQDTLALLPTGGGKSICFQVPALAR
PGLCLVVSPLIALMKDQVENLRKRGIKAEAVYAGMSHTEIDQTLDNCVYGPVKFLYVSPE
RLLTEMFQARVKKMRVSLLAVDEAHCLSQWGYDFRPPYLRIAELRELLPGVPCIALTATA
TEQVRQDIVEKLHFGPSHRVFQQSFARPNLSYSVLNTEDKLRRLEEVVRGVGADKTSIVY
ARTRRQTEDTSAFLQQAGVKAAPYHAGLPSEQRTRTQQDWMQNRIRCIVATNAFGMGIDK
PDVRLVVHLDAPDNLEAYYQEAGRAGRDEKYAFAVLLQAPNDADELRRRTQQAFPPLDTV
RRVYQALANFSRTAVGGGELVAFDFDLQQFAETYRIKALDAHNSLRTLEREGFVQVNEAV
NNPARVHIPIDHTDLYRFQVANAQHDQLIKSLLRFNGGELFTGFQRISENSLAQHLKKSV
LDVRKMLVFLHRSGIIQYQPKHESPQALFTTGRYDADKLPLDQKRLNQARELAVHKTESV
IRYADGGRCRQQLLLEYFGELDAAPCKVCDYCLAQKKARQAAAPAAGLREQLVQLLKATP
QTPREVLAHFAPGQATEVTEQLRELVELGQLRYAPDGRLG
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacagctacctaccgacgatattttactagtgttgcgccagacctggggccactcg
gcgtttcggccgatgcaggaggatattatccgctcggtgctggccgggcaggatacgctg
gctttgcttcccacgggcggaggaaaaagtatctgttttcaggtgccggctctagcccga
ccggggttgtgcctggtcgtctcgccgctgattgcgctgatgaaggatcaggtggaaaac
ctgcgcaagcgcggcatcaaggccgaggcggtatatgccggcatgagccacaccgaaata
gaccagacgctggacaactgcgtgtatgggccggtgaagttcctgtacgtgtcgcccgag
cggctcttgacggaaatgtttcaggcccgggtcaagaaaatgcgggtgagcctgctggcc
gtcgatgaggcgcattgcctctcacagtggggctacgacttccggccgccgtatctgcgc
attgccgagctgcgggagttgctgccgggcgtgccctgcattgccctcacggccacggcc
actgagcaggtgcgccaggatattgtcgaaaagctccatttcggccccagtcaccgggtt
tttcagcaaagctttgcccggcccaacctctcgtattcagtgctgaacaccgaagacaag
ctgcggcggctggaagaagtggtgcgcggggtaggggccgacaaaaccagcatcgtatat
gcccgcactcggcgccaaaccgaagatacgtctgcttttctgcaacaggccggcgtgaag
gcggccccctaccacgctggcctgccctcggagcagcgtacccgcacccagcaggactgg
atgcagaaccggatccgctgcatcgtggccacaaatgcctttggcatgggcatcgacaag
cccgacgtgcgcctggttgttcacctcgatgcgcccgacaacttagaagcttactatcag
gaagccggccgggccgggcgggatgagaaatatgcctttgccgtgctgctgcaggcccct
aacgatgccgacgagctgcgtcgccgcacccagcaggcctttccacccctcgacacggtg
cggcgggtatatcaggccttggccaacttttcacgcacagccgtgggcggtggcgaattg
gtggccttcgatttcgacttgcagcagttcgccgaaacctaccgcatcaaggccctggat
gcgcacaacagcctgcgaaccctggagcgggaaggctttgtgcaggtaaacgaggccgtg
aacaacccggcccgggtccacattcccatcgaccatactgatttgtaccggtttcaggta
gccaatgcccagcacgaccagctcatcaaaagcctgctgcgcttcaacggcggagaactg
ttcaccggattccagcggatttcggaaaacagcttggcccagcacctgaagaaaagtgtg
ctggacgtacgcaaaatgctggtgtttctgcaccgctcgggtattatccagtaccagccc
aagcacgagtcgccccaggcgctgtttacgaccgggcgctacgacgccgacaagctgccc
ctggaccagaagcgcctcaaccaagcccgggagctggccgtgcacaaaaccgagtcggtg
atacgctacgccgatgggggtcgctgccgccaacagctgctgctggaatatttcggggag
ctggatgccgcgccgtgcaaagtgtgcgactattgcttggcccagaagaaggcccggcag
gccgcggcgccggcagccgggctgcgcgagcagcttgtgcaactgctcaaagccaccccc
cagacgccccgggaagtgctggctcatttcgcaccgggccaagccaccgaagttaccgag
caactgcgggagctagtggagctaggccagttgcgctacgctccggatgggcggttgggg
taa
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